Pseudomonas syringae pv. syringae SM, PssSM_0326
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGATGCGGTGTTCAATGTCTATGAGTCGCTGTTCGTCAAGCCGCCGACCAATCAGGCTGTGCAGGTCACGTTACTCGATAACCCGAACATCAAGGTCA GCGGCAAAGTGCGCGAAGTGACCCCGGCGGTGTCGGCGCAAACCGGCACCTTGCAGATCAAGATCGCTCTGGACCCGCTGCCTGAAGGCATGGACCTGGG TTCGGTGGTCAGTGTGGCGTTGAGTGCACCGGCCAATGCCAGTGTCGAGTTGCCTTGGGCGGCGCTGACCAAGGACCTCGGCGAACAGTTGGGCAAGCCT GCCGTGTGGGTGGTGGACGAGCAAGGTAAGGTCAATCTGCGCAAGGTCACCGTGACCCGTTATCTTACCGCCAAAGTCATCATTGGCGACGGGCTCAAGA GTGGAGAGAAAGTCGTGGTGGCAGGCGGACAGTTGTTACACCCGGACATGCAGGTCGAAATTGCCGAACAGCCCAAGCAACCGAACGCACAGGTGCAGCC
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| DNA Sequence for Gene |
>PssSM_0326
ATGAAGCGTCTGTCATGCCTGCCGCTGGGCGGCCTGCTGTTGAGTGGTTTTCTATTGAGTGGCTGTGGCAAGGATGAAAAGCCTCCCGAGCCGGTGCGTC CTGTCGTGTTCGTCGAAGCCCAGCCTGAGTCGAATCAGGATTTCGGGCGCTTTGCCGGCAATATCCAGGCGCGTTATCAAAGTGTGCTGGGCTTTCGGGT GGCGGGTCGCATCGCCCGGCGCGACGTTGACGTAGGCGCTGAGGTCAAGAAAGGCGATTTGCTGGCAACCCTCGATCCGACCGATCAGCAGAACGCCGTG CGTGCCCGGCAGGGCGACCTGGCCAATGTGCAGGCGCAGTTCATCAACGCCCAAGCCAATGCTCGCCGCCAGCAGGAGCTGTTCGATCGCGGTGTCGGCG CCCAGGCGCAACTGGACATCGCCCTGACCGATCTGAAGACCGCCAGCTCGTCGCAGGAACAGGCCAAGGCCGCGGCTCAACAAGCCCGCGATCAATTGAG TTACAGCGAGCTGCGCAGTGATCACGACGCCGTGGTCACCGAATGGAAGGTCGAAGCCGGACAGGTGGTGACAGCCGGTCAGGAAGTCGTGACCCTGGCG CGGCCGGACATCAAGGAAGCGGTGATCGACCTGCCCGATACACTGGCCGACCAGTTGCCTGCCGACGTGGTCTTCACCGTCGCCAGTCAGCTGAATCCGG AAGTGAACACCACTGCCACCATTCGCGAAATCGAACCCCAGGCCGACCGCACCACACGTACGCGCCGTGCGCGTCTGTCGCTGGCGCAAACGCCAGCGGC GTTCAGGCTGGGCACGGCCATCAGTGTGACGCTCAGCTCGACCATCACGCCGCGCATGCGTCTGCCGATCAATGCCCTGCAGGAAGTCGATGGCAAACGC CAGGTCTGGATCGTCGACTCGCAGAGCCAGACGGTGAACCCCAGAGCGGTGACTATTGCCAGCCGTGACAGCGACTCCTTCGTGCTGACCGATGGCGTCA AAGCAGGTGAAAAAGTGGTGAGCGCGGGCGTCAACAGTCTCAAGCAAGGCCAGAAAGTCAAAGTCGATGAGGAAAGCCCGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGGAATTTCAATTTATCCGAGTGGGCCATCAAGCATCAGTCGTTCGTCTGGTACCTGATGTTCGTCGCGCTATTGATGGGCGTGTTTTCCTACATGAA ACTGGGGCGCGAGGAAGACCCGTCCTTCACCATCAAGACCATGATTATCCAGACCCGCTGGCCGGGCGCGACGGTGGACGAGACCCTCGAGCAGGTCACC GACCGCATCGAGAAGAAGCTCGAAGAGCTGGACTCGCTGGACTACGTGAAGAGCTATACCCGACCGGGTGAGTCCACGGTTTTCGTGTACTTGCGTGATA CGACCAATGCCAAGGCGATACCGGAAATCTGGTATCAGGTGCGCAAGAAAGTCGATGACATCCGTGGCCAGTTTCCGCAGGGGCTGCAAGGCCCGTCGTT CAACGACGAGTTCGGTGATGTGTACGGCTCGATCTATGCGTTTACCGCAGACGGTTTCTCGATGCGTCAGTTACGTGACTACGTCGAGAAGGTTCGCGCC
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| Amino Acid Sequence |
>RND-type cation/multidrug efflux system, membrane fusion protein (MFP) subunit
MKRLSCLPLGGLLLSGFLLSGCGKDEKPPEPVRPVVFVEAQPESNQDFGRFAGNIQARYQSVLGFRVAGRIARRDVDVGAEVKKGDLLATLDPTDQQNAV RARQGDLANVQAQFINAQANARRQQELFDRGVGAQAQLDIALTDLKTASSSQEQAKAAAQQARDQLSYSELRSDHDAVVTEWKVEAGQVVTAGQEVVTLA RPDIKEAVIDLPDTLADQLPADVVFTVASQLNPEVNTTATIREIEPQADRTTRTRRARLSLAQTPAAFRLGTAISVTLSSTITPRMRLPINALQEVDGKR QVWIVDSQSQTVNPRAVTIASRDSDSFVLTDGVKAGEKVVSAGVNSLKQGQKVKVDEESPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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