Pseudomonas syringae pv. syringae SM, PssSM_0325
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCCGGGCTCGCGGCCCGACAATCAGCTTCGCGAGATTATCCAGATCACAAGCCGGTTCTGTTCAGAACGAGACTACATTCACACGATTGCCAAGGCCG AACCTATTAGAACGAAACGTCGCAGAAGCACAGTCATCTGTTAGCCCTGTAAGGGGCTATCCTAAATACCAGAATTTAAGAAAGCCCGACTTCAAACGTT ACTTGTCTGAAGTCGACAGGATGCCACCGATACCTGAAGAGCGCTCGCGTTCAATCCGTGCGGGGCATGAATCGGTGGTTTGATAAATACACTACTTTCA CGTTCGGCAGAGATGATCAAGACAGTATCTTTGCCGGAGTTTGAACTGACCACCTTCAAAAGAAAGGTGCTGCGCGCCTCTCCCGCGCAACCGCTTTCTG CCCCGTTTCAATGAACCCTCCCTCTCGCATACAGTCGCATACTCGCGCTATTCTCTCGCCCTGATCACGCCCGCACTCGGCAGTCGCACAAGGAGTCTGC
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| DNA Sequence for Gene |
>PssSM_0325
ATGCCCGTTCGTATTTCAAGACTGGTTACGTTCGGTCTGGCCGCTGCCCTGGCGGCGCTGGCGGGCTGTGGCGAGGAAAAACCGGCTGAGCCCGAGCTGC CTCGGGTCTATATTCAAACGGTAAAAAGTGCCGACTTCGCCGCCAGTGTCGCCCTGACCGGTGATGTTCAGGCGCGAGTGCAGACCCGTCTTTCGTTCCG GGTCAATGGCAAGATCATTCAGCGTAATGTCGATGTGGGCGATCGGGTCACTGCCCGGCAGGTGCTGGCGCGGCTCGACCCCAAGGATCTGCAGATCAAT GTCGACTCGGCCGCTGCTGCTGTGGCCGCCGAGCAGGCCCGCGTGAGTCAGGCCAGCGCTGCTTTCGTCCGACAACAAAAACTGTTGCCCAAGGGCTACA CCAGTCGTAGCGAATATGACTCTGCACAGGCCGCCTTGCGCGGTAGTGAAAGTTCGTTGAAGGCGGCGCAGGCGCAATTGGCCAATGCCCGTGAACAACT GGGTTATACCGCTCTGGTGGCCGATGCACCGGGTGTGATCACCGCGCGTCAGGCTGAAGTCGGGCAAGTGGTGCAGGCCACCATGCCGATTTTCGATCTG GCGCGCGACGGTGATCGCGATGCGGTGTTCAATGTCTATGAGTCGCTGTTCGTCAAGCCGCCGACCAATCAGGCTGTGCAGGTCACGTTACTCGATAACC CGAACATCAAGGTCAGCGGCAAAGTGCGCGAAGTGACCCCGGCGGTGTCGGCGCAAACCGGCACCTTGCAGATCAAGATCGCTCTGGACCCGCTGCCTGA AGGCATGGACCTGGGTTCGGTGGTCAGTGTGGCGTTGAGTGCACCGGCCAATGCCAGTGTCGAGTTGCCTTGGGCGGCGCTGACCAAGGACCTCGGCGAA CAGTTGGGCAAGCCTGCCGTGTGGGTGGTGGACGAGCAAGGTAAGGTCAATCTGCGCAAGGTCACCGTGACCCGTTATCTTACCGCCAAAGTCATCATTG GCGACGGGCTCAAGAGTGGAGAGAAAGTCGTGGTGGCAGGCGGACAGTTGTTACACCCGGACATGCAGGTCGAAATTGCCGAACAGCCCAAGCAACCGAA CGCACAGGTGCAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGTCTGTCATGCCTGCCGCTGGGCGGCCTGCTGTTGAGTGGTTTTCTATTGAGTGGCTGTGGCAAGGATGAAAAGCCTCCCGAGCCGGTGCGTCCTGT CGTGTTCGTCGAAGCCCAGCCTGAGTCGAATCAGGATTTCGGGCGCTTTGCCGGCAATATCCAGGCGCGTTATCAAAGTGTGCTGGGCTTTCGGGTGGCG GGTCGCATCGCCCGGCGCGACGTTGACGTAGGCGCTGAGGTCAAGAAAGGCGATTTGCTGGCAACCCTCGATCCGACCGATCAGCAGAACGCCGTGCGTG CCCGGCAGGGCGACCTGGCCAATGTGCAGGCGCAGTTCATCAACGCCCAAGCCAATGCTCGCCGCCAGCAGGAGCTGTTCGATCGCGGTGTCGGCGCCCA GGCGCAACTGGACATCGCCCTGACCGATCTGAAGACCGCCAGCTCGTCGCAGGAACAGGCCAAGGCCGCGGCTCAACAAGCCCGCGATCAATTGAGTTAC
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| Amino Acid Sequence |
>RND-type cation/multidrug efflux system, membrane fusion protein (MFP) subunit
MPVRISRLVTFGLAAALAALAGCGEEKPAEPELPRVYIQTVKSADFAASVALTGDVQARVQTRLSFRVNGKIIQRNVDVGDRVTARQVLARLDPKDLQIN VDSAAAAVAAEQARVSQASAAFVRQQKLLPKGYTSRSEYDSAQAALRGSESSLKAAQAQLANAREQLGYTALVADAPGVITARQAEVGQVVQATMPIFDL ARDGDRDAVFNVYESLFVKPPTNQAVQVTLLDNPNIKVSGKVREVTPAVSAQTGTLQIKIALDPLPEGMDLGSVVSVALSAPANASVELPWAALTKDLGE QLGKPAVWVVDEQGKVNLRKVTVTRYLTAKVIIGDGLKSGEKVVVAGGQLLHPDMQVEIAEQPKQPNAQVQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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