Pseudomonas syringae pv. syringae B64, PssB64_4676 (rhlB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGACCTGATCGAGCAGCAGCGCGACAGCGGCATCGACCCGGCGCGAATCTTCCTGGCCGGCTTCTCCCAAGGTGGCGCGGTGGTCTTGCACGCCGGC TACCGACGCTGGCAAGGCCCGTTGGGCGGCGTACTCGCGCTGTCCACTTATGCCCCCACATTCAGCAACGAAATGACTCTATCGGCGAGTCAGCAACGCA TCCCGGCCTACTGCCTGCATGGCAAGCATGACGCGGTCGTGCCTTATCCGATGGGCCGCGCCGTCTACGACCATCTCACCGCCCAGGGTGTAACCGTTGA ATGGCAGGAATACCCAATGGAGCATCAAGTGTTACCGGAGGAAATTCGCGATATCGGCGTCTGGCTGGCTGAAAGGCTTCGCTGAAGCGCTCTTGACCCC TTGCGACGGACCGCTTTTGTAGCTCGCCATGGATGGCACTACGCCGAGCACGGTTCTTGCTTTACACTGCTCGGCGTACATTCCTTAACCAATTGATGAG
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| DNA Sequence for Gene |
>PssB64_4676
|rhlB
ATGACCGTGCTCAAAGCACTTAAAAAGATGTTCGGTAAGAGCGAGGCTGAGCAGCCTGCGCCTACTCCGATAACCTCTATTCCCGCCTCTCCCGCTGCCA CAGGCGACACACCGGATCATGCTGTCCAGACTCGGGCTCTGGACACGACCAGCGAGCCCTCCAAAGCCAGAGCGCCGCGCACCGATAAGCCGAGGGCCGA GCGCCCGCGTCGCGAGCGTGTGACAAAACCGTCAGCGCCGGCCTGGAAACTCGAAGATTTCGTCGTCGAACCCCAGGAAGGCAAGACCCGCTTCCACGAT TTCAACCTCGCGCCTGAACTGATGCACGCGATTCAGGACCTGGGTTTCCCATACTGCACACCGATCCAGGCGGGCGTACTGGGCTTCACCCTCAAGGGCA AGGATGCGATCGGACGCGCACAGACCGGCACCGGCAAGACCGCTGCGTTTCTGATCTCGATCATCGAGCAGCTGACCCAGACGCCGCCGCCTGCTGAACG CTACATGGGTGAGCCGCGCGCGCTGATCATCGCTCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCCGCCGACCTGACCAAGTACACCAACCTG AACGTCATGACGTTCGTCGGTGGCATGGACTTCGACAAGCAGCTCAAACAACTCGAAGCACGGCACTGCGACATCCTGGTCGCCACACCAGGCCGCCTGC TGGACTTCAACCAGCGCGGCGAAGTGCATCTGGACATGGTCGAAGTGATGGTCCTCGACGAAGCCGACCGCATGCTGGACATGGGCTTCATCCCGCAGGT ACGTCAGATCATCCGTCAGACGCCGCACAAGGGTGAGCGCCAGACCCTGCTGTTCTCTGCGACCTTCACCGAAGACGTGATGAACCTCGCCAAGCAGTGG ACGACGGACCCTTCGATCGTCGAGATCGAATCGTTGAACGTTGCCAGTGACAACGTCGAACAGCATATCTATGCCGTCGCCGGTGCCGACAAGTACAAGC TGCTTTACAACCTGGTGACCGACAATGGTTGGGAACGGGTGATGGTCTTCGCCAACCGCAAGGACGAAGTCCGACGCATCGAAGAGCGTCTGGTGCGCGA TGGCGTGAACGCGGCGCAGCTGTCAGGCGATGTGCCTCAGCACAAGCGCATCAAGACCCTTGAAGGCTTCCGCGAAGGCAAGATCCGCGTGCTGGTCGCC ACCGATGTGGCCGGTCGCGGTATTCACATCGACGGCATCAGCCACGTGATCAACTTCACCCTGCCCGAAGTGCCGGACGATTACGTGCACCGCATCGGCC GTACCGGCCGCGCCGGCGCCGATGGCGTGTCGATCAGTTTTGCCGGTGAGGATGACTCTTACCAGTTGCCCGCCATCGAGGAAAAACTGGGCCGCAAGAT CAGCTGCGAGACGCCGCCGACTCATCTGCTCAGGGCTGTGGTGCGCAGCAACGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCTTACTTCCAGCGATCAGCCGCTTGGTGATCGCTGTGACGACCTTCGACCCAGTGCGTACCTTCTGACGTGTTTTCACGCTTCCAGAACGGCGCGCGG GTCTTGAGGTAATCCATGACGAAGTCACAGGCTTCGAACGCTGCCTGACGGTGCGCGCTGGCAACGCCGACGAACACGATCGGCTCGCCAGGCTCCAGCG CCCCTACCCGATGCAGCACATCAACGCGCAGCAACGGCCAGCGCTGTTCGGCCTCGGCAATGATTTTTGCCAGTGCCTTCTCGGTCATCCCCGGATAATG CTCCAGAAACATGCCGGACACGTCACGCCCCTCATTAAAATCCCGAACATAGCCGACAAAACTGACCACCGCGCCGATGCCCAGGTTGGCAGCATGCAGC GCGTTGACTTCAGTGCCTGGGTCGAAGGCTGCCGCCTGGACGCGAACGCTCATTATCAACCTCCGGTCACGGGCGGAAAAAACGCGACTTCATCACCATC
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MTVLKALKKMFGKSEAEQPAPTPITSIPASPAATGDTPDHAVQTRALDTTSEPSKARAPRTDKPRAERPRRERVTKPSAPAWKLEDFVVEPQEGKTRFHD FNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNL NVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQW TTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVA TDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRAVVRSNA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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