Pseudomonas syringae pv. syringae B64, PssB64_4277 (opdB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGGCTGGGCCGCAGACTTGGGCTGGCGAGCCTTGCGGCTGCGTTCGATCGGCCAGCGGATCAGCACGAACAGCAGATACGCAGCGAAGGCGAACATGC CATACATGGCCAGGTCCGACACGGCGGTCCAGATGTTGCTGCCGACCTTGAACATCAGGTCAAGCGCGGTGATCGCCACGGCTGGCGCCATCGCATCCTT GGCAGGGTCGACCATGGTCGGCGTAAACAGCAGCACCGCGACCGCCACCAGCAAAGGCTCCTTGAGATACCGCCACATCCAGCGGGTCATCAGAAACCAT ACCAGCAGGCAACCCAACGCGGCGAAGGCGTAGACGCTCCAGGCGATCAGATAGTCGTTTTCGGTCATGACGTCCGTGGTAAGCCAGGTAAAGAGGCGCT TATGATAACGGCTTTTGCCTGACGCGGCTTGCCTCGCTTCAGTATTCGGTTCAGCGTGTACCGATATTTTCCTGATTGATGCCTTAACAGAGAGCCCAGC
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| DNA Sequence for Gene |
>PssB64_4277
|opdB
ATGTCCTTCTCGAATGCAACCTCCAGCGCCCCGATCGCCCGCAAGGCCGACGGTCCCGACCCTTATGCCTGGCTGCAGAACCGCGACACCGACGAAGTGC TCGACTACCTCAAGGCCGAAAACGCCTGGCAGGAGCAGCAACTGGCAGAGCAGACCGGGTTGCGCGAAAGCCTGTTCGAGGAAATCAAGGGCCGCATCCT CGAAACCGACCTGTCGCTGCCCTCCCCCTGGGGGCCGTACCTTTATTACACCCGAACCACACAAGGCGACGAATACGCCCGTCACTACCGCTGCCCGCGC CCGGCCGACGACAGCAACACGGTGGATGAAAGCGCCGAGGGATTGTTGCTCGACCCTAACGAGATGGCCGATGGCGGCTTTTTCTCGCTGGGCGCGTTCA GCATCAGTCCTGACCACCAGCGTCTGGCCTACAGCCTGGACACCAGTGGCGACGAGGTGTACGAGCTTTACGTCAAGGAACTGAGCACCGGTCAGATCAG CAGCCTGCCCTTCGAAAACTGCGACGGCAGCATGACCTGGGCCAACGACAGCCAGACCCTGTTTTTCGGCGAGCTGGACGACACCCATCGCCCGGGCAAG CTGCATCGCCATACCCTGGGCACGGCATCGGCCGAGCAGGTGTTCGATGAGCCGGACGGCCGCTTCTTCCTGCACTGTTTCCGCAGCAGTTCCGAGCGCC AACTGATCATTCTGCTCAACAGCAAAACCACCAGCGAAGCCTGGGTGCTGGACGCCGATCATCCGCAACAGGCCTTCACCTGCCTCGCACCGCGCAGCGA AGGTCACGAATACTACCCGGACCACGGGCTGCTCGATGGCGTCTGGACCTGGTTCATCCGCAGCAATCAGAGCGGCATCAACTTCGCGCTGTATCACGCA GCGCAACACGCCAGTGGCGTACCGGTGCGCGAGGACTGGCAGACGCTGGTCGCGCACGACGACAAGGTCATGCTCGAAGGCGTCAGCCTCAACGCCAAAG GCATCAGCCTGAGCCTGCGCGAGGGCGGCCTGCCGATCATCGAAGTACGTCCTCAGGCGCTGCCGACCTATCGCGTGCAGCTGCCTGATGCCGCCTACAG CCTGTATGTGCAGGACACGCTGGAATTCGACAGCGACAAAATCCGCCTGCGCTACCAGTCGTTGAACCGGCCAGCCCAGGTCCGTCAACTGACCCTGGCC AGCGGCGAGCAGGTGGTGCTCAAGGAAACCCCGGTACTGGGCATCTTCGACGCCGATGCCTACGTCAGCCAGCGTTTGTGGGCCACGGCCAGCGATGGCA CCCAGGTGCCGATCAGCCTGGTGGTCAAGCGCGAACTGGCCGGACAGGCCACCCCGCTGTATCTGTACGGCTACGGCGCCTATGGCGAGAGCCTCGACCC GTGGTTTTCCCACGCCCGTCTGAGCCTGCTCGACCGTGGCGTAGCGTTCGCCATTGCCCATGTGCGCGGCGGCGGCGAGCTGGGCGAGGCCTGGTATCGC AACGGCAAGCAGGAGCACAAACAGAACACCTTCGGTGATTTCATTGCCTGCGCCGAACACCTTGTCGCCCAGGGTCTGACCAGCGCGGAACAACTGGTGA TCAGCGGTGGCAGCGCCGGTGGCCTGCTGATCGGTGCGGTGCTCAACCAGCGGCCCGAGCTGTTCAAAGCAGCGATTGCCGAAGTGCCGTTCGTCGATGT GCTGAACACCATGCTCGACCCGGACCTGCCGCTGACCGTCACCGAATACGACGAATGGGGCAACCCGCAGGAGCCCGAGGTCTACGCGCGCATCAAGGCT TACGCGCCCTACGAAAACGTCACGGCCCAGGCCTACCCGACCATGCTGGTCATCGCCGGTTACAACGACAGCCGCGTGCAGTACTGGGAAGCCGCCAAAT GGGTCGCGAAATTGCGCGCCACCAAGACCGACGACAATCCGCTGCTGCTCAAGACCGAACTGGGTGCCGGGCACGGTGGCATGAGCGGTCGCTATCAGGG CTTGCGTGATGTGGCGCTGGAGTACGCGTTTATCTTCAAGGTATTGCAGATCGCTGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTTGGTGTGAAACACCTGTCTTACTAGGATCGGGGGCAGCGGAGTTGCCCCTTTGTCAGGATTACCAGACCTCACATGTCAGAACCACTGTCCAACCTG AACAACGCCATACGCGACATGCTGCTGGATTGCGGCCTGTTCGACACGCTGCTGCCGGGCGATTTCTTTACCGTAGCTGGCTATTTCAGCATTACCGATA TCGATAAGGGCGAGACTATTTTCGCCGAGGGCGATGCCGGAACCTTCATGTGCATCATCCATCAGGGCACCGTGTCTGTGCAGAAGCTTGCTGCAGACGG CCAACAGGTGGAAATCGCCGTTCTGCGGCGCGGACGCGCCTTTGGGGAAATGGCGGTGCTGGATGGCGAGCGCCGCTCGGCCAGTTGTGTTGCAGCCACC AGTTGCCAGCTATTGAACCTGGGCCGTGATTCACTGGACAAGATGCTCGAGGACGCGCCGAAAATCGCCGCCAAGATCATTCGCGCCCTGGCCATCTCGT
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| Amino Acid Sequence |
>Protease II
MSFSNATSSAPIARKADGPDPYAWLQNRDTDEVLDYLKAENAWQEQQLAEQTGLRESLFEEIKGRILETDLSLPSPWGPYLYYTRTTQGDEYARHYRCPR PADDSNTVDESAEGLLLDPNEMADGGFFSLGAFSISPDHQRLAYSLDTSGDEVYELYVKELSTGQISSLPFENCDGSMTWANDSQTLFFGELDDTHRPGK LHRHTLGTASAEQVFDEPDGRFFLHCFRSSSERQLIILLNSKTTSEAWVLDADHPQQAFTCLAPRSEGHEYYPDHGLLDGVWTWFIRSNQSGINFALYHA AQHASGVPVREDWQTLVAHDDKVMLEGVSLNAKGISLSLREGGLPIIEVRPQALPTYRVQLPDAAYSLYVQDTLEFDSDKIRLRYQSLNRPAQVRQLTLA SGEQVVLKETPVLGIFDADAYVSQRLWATASDGTQVPISLVVKRELAGQATPLYLYGYGAYGESLDPWFSHARLSLLDRGVAFAIAHVRGGGELGEAWYR NGKQEHKQNTFGDFIACAEHLVAQGLTSAEQLVISGGSAGGLLIGAVLNQRPELFKAAIAEVPFVDVLNTMLDPDLPLTVTEYDEWGNPQEPEVYARIKA YAPYENVTAQAYPTMLVIAGYNDSRVQYWEAAKWVAKLRATKTDDNPLLLKTELGAGHGGMSGRYQGLRDVALEYAFIFKVLQIAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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