Pseudomonas syringae pv. syringae B64, PssB64_3769 (oprI)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGACTTCGTCATGGTGGATGGACAACGCCTCGCTCATCGCTACTCCTCGCGGGTCTTGGAATTTGACCCCTACCTTACCGGTCTTTTTCAGGCGAAGG AACATCTACGCCACCCAGTGTCTGTTTTCGACACCGGTAGAGCACTGCCGATCTCGACGGACATCACATTGAGATAGTAGGCGCCATTAGCGACTATGCT CAAGCGCGGTCGATGTAAAAACACCTGGAAATGCTCACGTGCCGACCGACAGTCAATCAGGCATGGTCTTACGCGTACTGTTCGGAACGCCTTAGCAAGG CAAAGGTCCAGTTAAAGTGGATAGTTTTTGTACAGAACGCTTGAGAAGTAACGCGGAACGCTTTCAAAGCGAGGAATTTTAGCAGCTTCTTGCGCCGGGT CCGTTTACTTACTACAAACAATGGGTACTATGTACGCCGGTCGTTTTCTCATTTTCGAGAGATGACTAATTTGAAAAAAAATTCCTTGAAGGTGAACACG
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| DNA Sequence for Gene |
>PssB64_3769
|oprI
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCTCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGTATCCAAAGAAACCGAAGCTCGTCTGACAGCTA CCGAAGACGCAGCAGCTCGTTCGCAAGCACGTGCCGACGAAGCCTACCGCAAGGCTGACGAAGCTATGGCTGCTGCTCAAAAAGCTCAGCAAACTGCTGA CGAAGCCAACGAGCGCGCTCTGCGCATGTTGGACAAAGCCAGCCGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAATCCCCCGGGATTATTGAAAGCCGACCCGGCAACGGGTCGGCTTTTTTTTGCCTGTTTTCTGGCTCGGTGCTTGCCTGCGCAAGCCTGAATGACTGTT CTGCTGTATCAGGAAGATAACTAATTTTTGCCAAAGCTCCGCATTGGCACGAGAGCAATTGCTGGCGACGATTTACTGAAAAATCACCGGTTCTTCAGCA TTCGCAGGCGCTTTGCCCGGTTCTGCGATCTCCACCGGCATGCCGTCTTCGGCCGCAACCACATCACGTACCACATCCCAGTTCATGCGCAGGTTGTTGG CCAGGTCGTCACGCTTGAGCAGCGCATTGATCACCGCAGTGTGCTTGTCAACCACCGACGGGTTGCCCAGGTCATCAACCGGCGTGTGCGCTTCCAGGTA AACCTTGCCACCGCTGATGCCGAACTTGTAAGGCTCGCTGATGATGCGCACGGTCGTACCGACCGGGGCCATGTCGGCCAGTTCCAGCACGTTATTGTTG
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| Amino Acid Sequence |
>outer membrane lipoprotein OprI
MNNVLKFSALALAAVLATGCSSVSKETEARLTATEDAAARSQARADEAYRKADEAMAAAQKAQQTADEANERALRMLDKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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