Pseudomonas syringae pv. syringae B64, PssB64_3743 (oprF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGAGGTGATGCTTAAAGTGTTGTATGGGTTGAAAAATTTTGAAGGTAAATCTAAATTTAAAACCTGGCTGTACAGCATCACCTACAATGAATGCATCAC GCAGTACAGGAAGGAACGGCGTAAGCGTCGCTTGATGGACGCGCTGAGTCTGGATCCACTTGAGGAAGCGTCGGAAGAAAAGGCGCCCAAACCTGAAGAA CGGGGCGGACTTGATCGCTGGCTTGTGTATGTGAACCCGATCGATCGGGAGATTCTGGTGCTGCGTTTTGTTGCAGAACTTGAATTCCAGGAGATCGCTG ACATCATGCACATGGGCTTGAGCGCAACGAAAATGCGTTACAAGCGGGCTTTAGATAAATTACGAGAGAAATTTGCGGGAATCGCCGAAACTTAATACGG TGCAAATATCTCTAACAAACTGGCAAGGTCTGGTAGACTTGCCGCTGAGTTGTCCCCATGTGTGGGACTGCTTAATAATCATCAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>PssB64_3743
|oprF
ATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTACTATTGTTGCCGCAACTTCGTTCGGCGCGCTGGCTCAAGGCCAAGGCGCAGTCGAAATCGAAG GCTTCGCCAAGAAAGAAATGTACGACAGCGCCCGTGATTTCAAAAACAACGGCAACCTGTTCGGCGGCTCGATTGGCTACTTCCTGACCGACGACGTTGA ATTGCGTCTGGGCTACGACGAAGTCCACAACGTTCGTAGCGATGATGGCAAGAACATCAAGGGCGCAGACACTGCCCTGGACGCTCTCTACCACTTCAAC AACCCAGGCGACATGCTGCGTCCATACGTTTCTGCCGGTTTCTCCGACCAGAGCATTGGCCAGAACGGTCGTAACGGTCGTAACGGTTCTACCTTCGCCA ACATCGGCGGCGGCGCCAAGCTCTACTTCACTGATAACTTCTACGCCCGTGCTGGCGTTGAAGCTCAATACAACATCGACCAAGGCGACACCGAGTGGGC TCCAAGCGTCGGTATCGGCGTAAACTTCGGTGGCGGCAGCAAGAAAGTTGAAGCAGCACCAGCTCCAGTAGCTGAAGTGTGCTCCGACAGCGACAACGAC GGCGTGTGCGACAACGTCGACAAGTGCCCGGACACCCCAGCCAACGTTACCGTTGACGCTGATGGCTGCCCAGCAGTTGCCGAAGTGGTTCGTGTTGAGC TGGACGTGAAGTTCGATTTCGACAAATCCGTAGTCAAGCCTAACAGCTACGGCGACATCAAGAACCTCGCTGACTTCATGCAGCAGTACCCACAGACCAC CACCACTGTTGAAGGTCACACTGACTCCGTCGGTCCTGACGCTTACAACCAAAAACTGTCCGAGCGTCGTGCAAACGCCGTTAAACAGGTTCTGGTTAAC CAGTACGGTGTTGGCGCTAGCCGCGTAAACTCGGTTGGTTACGGCGAAAGCAAGCCAGTTGCTGATAACGCAACTGAAGCTGGCCGCGCAGTTAACCGTC GCGTAGAAGCAGAAGTAGAAGCTCAAGCTAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTAGCCGCTTGTACTGAAAAGCCCGGCTTAGGCCGGGCTTTTCTTTGCCTGCGATTTGGCATTGCGTCTGTTCAGGCGGGCTTGATGTCAGCCGGCATTC AGCTGTGCGTGGTCCATCAGCGTTTGATTCAGCAGCTCATTGCTGTACGCGGCAACCGCGCCGATCACCAGAATGGCGGGGCTCTTCAATTGGAAAGCGG CTGCGTCCTGTTGCATGTCATTCAGGGAGCTGCGGCATTCGCGCTGCCACGGCAGCGAAGCGTTCTCGATCATCGCCACCGGCATCTCGCCACTCATTCC GCCTGCCAGCAGGCTCTCGCGAATTTTCGCCAGTTTCGCCACGCCCATGTAAACCACCAGGGTGGTTCCGCCTTGCGCGAGCGCCTGCCAGTTGAGGGTG CTGTCGTCCTGAGTGTGAGCGGTGACCAGCGTCACGCCACGGCTAATACCACGCAGGGTCAGCGAAATGCCGCACTGTGTTGCACCGGCAAGACCCGCTG
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| Amino Acid Sequence |
>outer membrane porin OprF
MKLKNTLGLAIGTIVAATSFGALAQGQGAVEIEGFAKKEMYDSARDFKNNGNLFGGSIGYFLTDDVELRLGYDEVHNVRSDDGKNIKGADTALDALYHFN NPGDMLRPYVSAGFSDQSIGQNGRNGRNGSTFANIGGGAKLYFTDNFYARAGVEAQYNIDQGDTEWAPSVGIGVNFGGGSKKVEAAPAPVAEVCSDSDND GVCDNVDKCPDTPANVTVDADGCPAVAEVVRVELDVKFDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSVGPDAYNQKLSERRANAVKQVLVN QYGVGASRVNSVGYGESKPVADNATEAGRAVNRRVEAEVEAQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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