Pseudomonas syringae pv. syringae B64, PssB64_3220

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGCCCGGAAGCGTGAAACGTCGTGTCTGGCGAAACCCTGGCGGATTGAATCATGACGCTGCTCCTGTGGCTGCGTGGTTTTTATAGGGGCTGCATGACGG CGATGGGTCAGAGGATGTCTGCGTATTGCGACTCAAGGACCTCAAGCAGCTGTCGGGTGAACGTTCGCCCTCGGTAGAAAGCGAGTTGCACGCAAACATC CTCAACGCCAACAGCCGTGGCAAACCTAAATCAAGCGTCGCGGGGAGCTGTCTGCTAATCGGCCAAAATCCGACTTTACGTCACAAAGGACACAAACAGG ACACGCAGGACGCTTTTTCAGCGCTCATTTGTCGTCCGGGTGAATCGCCCGGATGCAGCGCGGATCAACGTGTTGCGGGCTGACAGCCCCGATTTCACGC AGCGGCGATGGGCTTTTTGCAAAAAAGAGCGTGGACTCGGGATATAACACTAATTAGAATCAGTCTCATTTGGCGCATCCCATCGCTCAAGGCTTTTGAC
DNA Sequence for Gene
>PssB64_3220
ATGACTCAAGCAGCGACGCTATCACAGCAGACCTTGCATTCCCTGTACCGCGATCATCATGGCTGGCTGGAAAGCTGGCTGCGCAGACGCATGGGCAATG CCTGGGATGCGGCTGACCTGAGTCAGGATACGTTCCTGCGCGTGCTCTCCAGCTCCCAGCAGATCGCCGATATGCAGGAGCCGCGTGCCTACCTGCTGAC CGTGGGCAAGCGGCTGCTGAGTAATTTCTACACTCGCCGCAGCCTTGAACAGGCTTATCTGGAAGCGCTGGCGCAGTTGCCCGAAGAAAGCGTGCCGTCG CCGGAGCAGCGCTGGTTGCTTCTGGAAACCCTGCAGGCGCTGGACGAGCTGCTCGATGGCCTGTCGGCAGTGGTGCGCCGGGCGTTTCTCTGGAGTCAGC TCGAGGGGCTGGGCTATCGGGAAATCGCTGAACGCCTGAGCGTTTCTGAACGCACCGTCAAACGCTATATGGCGCAAGCCTACGAGCATTGTCTGTTGGT GGACTGGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCGCCCGGCACCTTCGAACGAAGAACGCGAGGTCGTATGCAAAGCGGCGCAGTGGCTGGCGCTTCTCGAGTCCGGCGGTGCCAGCGATGAAGATCACGC CATGCTGCAACACTGGCGTGACAGCTCCGCCAGCCATGAGCGCGCCTGGCAAAAGGCCCAACAGCTGCGTCAGCGTTTTTTCGGTCTGCCTGCCAACCTG GCCATGGCGACGCTGGATCGTCCTGACAAGGCCAGACGCGCAACGCTGAAAAGGGCGCTTGGGGCCGTTGCGCTGGTCCCCACCGTCTGGCTGCTGGGGC GTCAATTGCCGCTGGATGTCTGGCGTGCCGACCTGCAAACCGCAGTCGGCGAGCACAAGCGCCTGTCGCTGGCCGATGGCAGCACCTTGCAACTGAATAC CGACAGTGCGGTGAACGTGGATATGGGCGCCCGGGCAATCACGCTGGTGCGGGGCGAAATAGCCCTCAAGGTGCCTGGCAGCGTGCCGCTGACCATCAAC
Amino Acid Sequence
>RNA polymerase sigma factor
MTQAATLSQQTLHSLYRDHHGWLESWLRRRMGNAWDAADLSQDTFLRVLSSSQQIADMQEPRAYLLTVGKRLLSNFYTRRSLEQAYLEALAQLPEESVPS PEQRWLLLETLQALDELLDGLSAVVRRAFLWSQLEGLGYREIAERLSVSERTVKRYMAQAYEHCLLVDW
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site