Pseudomonas syringae pv. syringae B64, PssB64_3129 (arnB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACACCCGGCAAGCTTCCTCCTGACCGGGGTTTACGCAAACGCACGGCCTGCGTCTAAAAAAACCGAGAAAAAAGCTGACCTCCAATGAAACCTGGTCAAT AGCAACCTTCTCGAGTCAGGCTCGACCCTGTCCGACAAAGCAAAACCCATTTCCCGGTCATGAAAGCTTCATTAAAAAAACCTGCAACTGCAACACACTT CATCCGCTTTAACTTTCCATGATTATCATGAGCAAGCTGAACTAAAGCTGTCTGTTCATGACGAGTTCGATGAAATCTGAACGGCAGATTAATAATTCTA CATGGACGCATAACGGCGTTGTCGTTCGTTTGGCTTTCACCCTACTCTATGATTCGAAAGCCTGCCAGGCGATACAAAAAAGCAACGGCGTCTGAACATT ATTTTCATAGTTGAACGCCTAAGTTCACCGCACTCACGCGCACTCCTGGTGTGACTTTTTTATGTTCTGCCCTGCTGCGTCAATCGGAGAGTCTCTGTAG
|
|
| DNA Sequence for Gene |
>PssB64_3129
|arnB
ATGAGTCAAACTTTTCTTGCCTTTTCACGGCCGTCCATTGGCGATGAAGAAATTGCTGCGGTAACGCGCGTGCTGCACTCCGGATGGATCACCACTGGCC CGGAATGTCAGAAGCTGGAGGAAGAGTTCGCCGCGCGGGTCGGCGCGCAGCATGCAGTGGCACTGTCTTCGGCCACCGGGGCAATGCACGTTGCGCTGCT GGCGCTGGGCGTAGGGCCTGGCGATGAAGTGATTACGCCGTCACAAACCTGGGTGTCGACAGCCAACATGATCTGCCTGCTGGGGGCCACTCCGGTGTTC GTCGATGTCGACCGTGACACCCTGATGACCAGCGCCGCGCTGATAGAGCAAGCCATCACCCCGCGAACCAAGGCGATCGTGCCGGTGCATTACGCAGGCG CTGCATTCGATCTCGACCCGCTGTATGCGTTGGCCGACCGGCACGGCATCACCGTGATCGAAGACGCTGCGCATGCCGCCGGCACCGGTTACCAGGGACG TCCGGTCGGCCAGCAGGGCACTGCCATCTTTTCGTTTCACGCGATCAAGAACATGACCTGTGCCGAAGGCGCGATGCTGGTCACCGACAATGCGCGACTG GCTGATCGGGTGCGTCAGCTCAAATTTCATGGCCTGGGTGTCGATGCTTACGACCGCCTGACCCTGGGTCGCAAGCCCCAAGCCGAGGTTATGGAGCCTG GTTTCAAATACAACCTGGCCGACATCAATGCGAGCATTGCGCGGGTGCAGTTGCAGCGCCTCGACGCCATCAATGCACAGCGCCAGGCGCTCGCCAGCCA TTACCTCGAACGACTGGCCAGCAGCCCCGTTCTGCCTCTCGCCCTGCCCCGGCATGCCCAGCAACACGCTTGGCACCTGTTCATTCTGCGCATCGATCCC GAGCGCTGCGGGCTGGATCGCGACGCCTTCATGAAGGCCTTGCAAGCGCGAAACATCGGCACCGGCATCCACTTCATCGCCACTCACCTTCACAGCTATT ACCGCAAGCGTTTCCCCGACGTCTGCCTGCCCTACACGGAATGGAATTCATCAAGGCTGTGCTCCATACCCCTGTTTCCCGACATGACCCTCGATGATGT CGAGCGGGTTGTCGGTGCCATTGAATCGACTGTGGAATCCAGCCATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AACCGTATCCGATAAAGTTCGTGTCGATCGTCATCCCTGTCTACAACGAACGACAAAGCCTGCCAGAGTTGCTGCGCCGCACTGAAGCGGCCTGCGAACA GCTCGACCACCGCTTCGAAATCGTGCTGGTCGACGATGGCAGCCGCGACGACTCGGCAGACATCCTCCAGCGGGCTGCCGAGCGCGCCGACAGCCCCTTC GTCGCAGTGATCCTGAATCGAAACTACGGTCAGCACGCCGCCATCATGGCTGGATTCGAGCAGTGCCAGGGCGACGTGGTCATCACCCTCGATGCCGACC TGCAGAATCCACCTGAAGAAATCCCTCGTCTGGTAAAGCTCGCTGAACAGGGATACGACGTGGTCGGTACGGTGCGCGGCAACCGTCAGGACTCCGCCTG GAGACGCTGGCCATCGAAACTCATCAACCTGGCCGTGCAGCGCTCCACCGGCGTGGCCATGAACGATTACGGCTGCATGCTGCGCGCATACCGGCGCACG
|
|
| Amino Acid Sequence |
>Polymyxin resistance protein ArnB
MSQTFLAFSRPSIGDEEIAAVTRVLHSGWITTGPECQKLEEEFAARVGAQHAVALSSATGAMHVALLALGVGPGDEVITPSQTWVSTANMICLLGATPVF VDVDRDTLMTSAALIEQAITPRTKAIVPVHYAGAAFDLDPLYALADRHGITVIEDAAHAAGTGYQGRPVGQQGTAIFSFHAIKNMTCAEGAMLVTDNARL ADRVRQLKFHGLGVDAYDRLTLGRKPQAEVMEPGFKYNLADINASIARVQLQRLDAINAQRQALASHYLERLASSPVLPLALPRHAQQHAWHLFILRIDP ERCGLDRDAFMKALQARNIGTGIHFIATHLHSYYRKRFPDVCLPYTEWNSSRLCSIPLFPDMTLDDVERVVGAIESTVESSH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|