Pseudomonas syringae pv. syringae B64, PssB64_2946 (oprN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGCCCAATACGAAAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTACCGATGACCCTGCTCTCGGCGATTGCCGGGGTGATGATCGCCGGCAGCG ACAACAACATCTTCACTCAGATCGGCCTGATCGTACTGGTAGGCCTAGCGTGCAAGAACGCGATTCTGATCGTCGAGTTCGCCAAGGACAAACAGGCTGA AGGGATGAGCCCGCTGGATGCGGTACTGGAGGCATGCCGCCTGCGTCTACGGCCGATCCTGATGACCTCGTTCGCCTTCATCATGGGGGTCGTGCCTCTG GTGCTGTCCAGCGGTGCGGGTGCCGAGATGCGCCATGCGATGGGTGTCGCAGTGTTCTCCGGGATGCTGGGTGTCACGTTCTTCGGCCTGCTGCTGACGC CGGTGTTCTACGTGCTTATCCGTAATTACGTCGAACGCCAGGAGGCCCGAAAGGCCGCCAGGGTAAACAGCCAGCAAAACCTGCCTGCGGAGATGCATTG
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| DNA Sequence for Gene |
>PssB64_2946
|oprN
ATGAGCGCGTACAAAGTCTTCATCCCGAGCCTGCTGGTGATGGCACTGGCGGCCTGCGCCGTGGGCCCCGACTACCGGGCACCGGTTACGGCGCCAGCGA AACTAGCGTCCGCCGCCCAGGGCAGCTATGACCGCAGCAAAGTGGACAGAGCCTGGTGGCAGCAGTTCGAGGACCCGACCCTCAATAAACTGGTAGCCAG GTCACTGGACGGCAACCGCGATCTGCGCGTCGCCTTCGCCCGGCTCAAGTCGGCGCGAGCCATTCGCGATGACGTCGCCAACGATGTGATGCCAGTAGTA ACCAGTCGCGCCAGCAGTGACATCGGCAAGGGTCAGCAACCCGGCATCACCGAGCGCCGAGTCAACAGCGAGCGCTACGACCTGGGCCTGGACATGGCCT GGGAAGTGGACTTGTTCGGGCGCATCCAGCGCCAGCTGGAAGCCAGCGACGCCGATCAGGAAGCTGCAGAGGCCAACCTCTATCAGCTTCAGGTCACCCT GATTGCCGAGGTGGTCGACGCCTACGGCCAACTGCGCGGCGCACAGCTGCGAGAAGCCATTGCCCGCGACAACCTGAAAAATCAGCAGAGTTCTCAGGAC GTGACCACGCAACTGCGGGATGCGGGTGTGGGCAATGAGCTGGATGTGGTGCGTGCAGAGGCACGACTGGCCGCTGTCGAAGCGACCGTTCCGCAGTTGC AGGCCGAGCAGGCTCGCCAACGCAACCGCATCGCCACGTTATTGGGTGAGCGTCCGGAAAACCTCAGCGTCGACTTGAGCCCTAGCAAACTGCCGGCCAT CGCCAAGGCCTTGCCGATTGGCGACCCTACGCAAGTGTTGCGCAATCGGCCGGACATCCGTGCAGCCGAGCGACAACTCGCTGCATCGACCGCACGTATC GGCGTTGCGACTGCCGATCTGTTCCCAAGGGTCAGCCTGAGCGGTTTTCTGGGCTTTACCGCCGGACGCGGCTCGCAGATCGGTTCGTCAGCGGCCAGAG CCTGGTCGCTGGGCCCGAGCATCACCTGGGCAGCCTTCGATCTGGGCAGTGTCCGGGCGCAGATTCGCAGTGCCGACGCTGACGCCGAGGGCGCACTGGC CAACTATGAGCAGCAAGTACTGCTCGCCTTGGAAGAGTCGGAGAACGCGTTCAGCGATTACGACAAACGCCAGCAGCGGCTGGTCTCGCTGATGCGCCAA AGCGATGCGAGTCGCTCGGCGGCCAGACTGGCCTCGGTGCAGTATCGCGAAGGCACGGCGGACTTCCTGGTCCTGCTGGATGCCGAGCGCGAGCGTCTGG CGGCCGAGGACGCTCAGGCGCAGGCAGAAATCGAGCTGTACCATGGCATTGTGGCTATCTACAAGGCACTGGGTGGTGGCTGGCAACCTCAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTGAAAAGCCGGTAAACCCGCCCCGCGTCCGATCAGGCCGCGGGGCTTTTTTTGCCTGAAACCCGGCTGCATCATGATTGCCGTTTGACAGCTGCCAG CCACTCCCCGAAGCTGCAACCCGTCAAGCATTGGAAATCGATATGCCCAGACTTTCTACCACGGGGTTATCGCCTCAACCCACTTCTCGACGTCGCTGGC TGATCGGCGCAGCGGCTGCAGCGCTTTTGGTGCTTTCGCTGGTTTTCTGGTGGTGGCGCATGCCCATCCAGACCGCTCCCGTGAAGCTGAGTCATACCTA TGCGCAGGCGTTGGAGCAGGCACATGACGGCAAACCGGGTGCCGCGCGCGTGCTGTATCAACAACTGGCTCGTACTGACCTGTCTGACACGCAACGCATC AGCCTGCTCGCCGAACTGAACGACTATCCCAGCCCCCAGGCCCTCAAGTTGCTCGACGCTGCGTTGAGTAACCCGTCCGCTCAAGTGCGCGAAGCGGCCA
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| Amino Acid Sequence |
>RND transporter
MSAYKVFIPSLLVMALAACAVGPDYRAPVTAPAKLASAAQGSYDRSKVDRAWWQQFEDPTLNKLVARSLDGNRDLRVAFARLKSARAIRDDVANDVMPVV TSRASSDIGKGQQPGITERRVNSERYDLGLDMAWEVDLFGRIQRQLEASDADQEAAEANLYQLQVTLIAEVVDAYGQLRGAQLREAIARDNLKNQQSSQD VTTQLRDAGVGNELDVVRAEARLAAVEATVPQLQAEQARQRNRIATLLGERPENLSVDLSPSKLPAIAKALPIGDPTQVLRNRPDIRAAERQLAASTARI GVATADLFPRVSLSGFLGFTAGRGSQIGSSAARAWSLGPSITWAAFDLGSVRAQIRSADADAEGALANYEQQVLLALEESENAFSDYDKRQQRLVSLMRQ SDASRSAARLASVQYREGTADFLVLLDAERERLAAEDAQAQAEIELYHGIVAIYKALGGGWQPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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