Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TTCTGGCATAGCGGCTAATTGTCGAGTGGTGTCCGACAACTAGCTGTTATTACTCATCCCGTTTTGCTCATGCGCCACACCACAGGGTTTGATCGAAACC TGCTGCCTCTGTCTTACACCCTGGCCATGCAAAAAAGACCGCCGTCGCGGCTCCAGAGCCCTGGAAGGTCAGCATGCTTGCGCCTGTTTCCTTAACCCAT AGTCATTTTATTAGTGTGTCTGCGGCCTTGAGCCGAGCCGGTTTTCGCGTGCTAGCCGATCAGCATTTCTGCATATATTTAATTATGACCTTAATACTAT GTCGAAAAGATACGCTGTCCCCTATCAATATTAAGCACATGACCCTTGAGCGCTGGCTAAAGGTCAGTGTTGTAAAAATCAGCTTCAAAAAAAGTTCAAC AAATCGGATACAAGGTCGATACAAATATTTGACGCCGCTATGATGGCGTTCTAGTATTGCCCACCTTTTTGATATCAATATGCTACCGCAAGGACGCGCC
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DNA Sequence for Gene |
>PssB64_2839
GTGTATCCTCATGCCCTAAAACTGGCTTTGCTGCTACTGCTCGCCATCGCGCCAGCTACCTCGCTTGCAGCCACTGCTCCCGCCAGTTTGCCAGGTGACC AGGATCTTATTCGTGACCGTCAGGATCGCCTGCTCGAAGAGCAGCGCCGCCGCCTTGAAGAACTCAAGGACCTGCCGGGCAAACAAACCGCACCCGCTGC CCCGAGTTCTCCGGCCGATACACGTTGTTTCACCATCAATCGTATTGAGCTCAAGGGCGCCGACTCGCTGTCGGCCGCCGAGCGCGATGCGTTGACCAAG CCCTATATTGGCAAGTGCCTTGGTGTTGCGCAGCTCAATGAGCTGCTTAAAGTCATCACTGATCACTACCTCGAAAAAGGCCTGGTGACGACCCGCGCCT ACCTGCCGCAACAGGACCTGTCGACAGGCGACCTGCAAGTGCTGGTCATCGAAGGCAAGCTGGAGCATCTGCGTGGCGATGCCGCCAGCGGCCTGTCGGA GCGTGAGCTGGCCATGACGTTTCCCGGCAGGGAAGGCCAGATGGTCAACCTGCGCGAAATCGAGCAGATGGTCGATCAGCTCAATCGCCTGCCGTCCAAT CAGGCGCAGATGGAGCTGACCCCCGGTAAGGCCGTCGGTGGCAGTGACGTAGTGGTCAAGAACACTCCGCAAAAACCATGGCGGGCCAACCTGTCGCGTA CCAACGAAGGTCAGCGCAGCACCGGCGAGCAGCAATGGAACGCTGGCCTTGAGTGGGATAATCCGTCGGGGCTGGCCGACCAGTTCAGCCTGCGCGGCGG CCACGATGCGATCAGCGATCGGCAGAAAGCCTCCCGCAACGCCTTGCTTGCCTACAGCCTGCCGTGGGGATGGTGGACGTTCAGCTACCTGTACAACACC AGTGAATATCGTTCGGTGGCGCAGGCCTCGAACGTCAACTTCAAGCAGGACGGCGATAGCCAGAACCACCAGTTCAAGGCCGAGCGGGTCGTGTATCGCG ACGCGCTGAGCAAGACCTCGCTCAATGCCGGTCTGTCCTACCTGCGCACCAACAATTATGTCGAAGGCAGCAAGCTGGCAGTCAGCAGCAATCGCATCAC CGAGGCGCAGTTCGGCATCAACCACGGTCGGCGGGTCGGCTCGGCGTTCGTCAACATCGATCTGGGCATGCAGCAAGGCATCGGTGCACTGGACGCGCAG GGCAACCACGATCCTCGCCCGGGTGAGGCCGATGCGCGGTATCGCAAATACACCGGCACCCTCAGCTATCTGCATCCCTTTCAACTGTGGGGCGAAAACC TCAGCTTCACCAGCCTGGCCACCGGGCAGCGCAGTGAGGATGTGCTGTTCAGTTCGCAACGCACCAGCTTGGGCGGATCGGCATCGGTGCGCGGTTACAA GGATGAGTTTCTGTCTGGCGACAGCGGTGGTTACTGGCGTAACGAGTTGCGCCTGACTCGCCCGGTCACCCTGGACTGGCTGCGCCCGGTGTTCGCCGAG TATGGCGCGGCTGCCGGTTACGACCAGGGTGTTATCCGCAACGATCGTTACAACGGCAATCAGCATGGGCGCTTGTCCAGTAACTCGTTCGAGCTGTTTA CGCGTGGCCAGCACGTTGCTGCCTCAGTGACGTTCGCTCATTCCCTGGAACGTCCCGATGTGATCGAGCGCGAAGCGCCGATCTATTTCCGTATGGACTT CTTTCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TAGCGCCGTTTTCAACCTACCTGTTTCGAGGTCATTTACATGGACGTCCACCAACTGGCTCTGCTTGCTCGTCAGCCTTCTGCTGTGCTGGTCGAGCGCC GGTCTTTCTGGGGAATGCCCAAGCGCGGCCTCGCGCTGATTCTCGCCAATGCGATGTTCTGGCAGCCGATGCTGGTTCAAGCCGAAGGCATCGTGGTCAG CGGCACGAATACCAGTCTGAACCAGGCCGGCAATGGCGTGCCTATCGTCAACATCGCCGCGCCTAATGCCAGCGGCCTGTCACACAACCAGTATCAGCAG TTCAACGTCGACAGCCAGGGCGTCATCCTCAACAACTCCACCAACCAGACCCAGAGCACCCAACTGGGCGGCATCATCGTCGGCAACTCCAACCTGCGCG GCACGGCGGCCAGCACCATCCTCAACGAAGTGGTCGGGGCCAACGCCAGTCAGCTCAGGGGCTATACGGAAGTGGCCGGGCAGGCGGCGCGTGTCATCGT
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Amino Acid Sequence |
>Adhesin/Hemolysin activation/secretion protein, FhaC/HecB/ShlB family
MYPHALKLALLLLLAIAPATSLAATAPASLPGDQDLIRDRQDRLLEEQRRRLEELKDLPGKQTAPAAPSSPADTRCFTINRIELKGADSLSAAERDALTK PYIGKCLGVAQLNELLKVITDHYLEKGLVTTRAYLPQQDLSTGDLQVLVIEGKLEHLRGDAASGLSERELAMTFPGREGQMVNLREIEQMVDQLNRLPSN QAQMELTPGKAVGGSDVVVKNTPQKPWRANLSRTNEGQRSTGEQQWNAGLEWDNPSGLADQFSLRGGHDAISDRQKASRNALLAYSLPWGWWTFSYLYNT SEYRSVAQASNVNFKQDGDSQNHQFKAERVVYRDALSKTSLNAGLSYLRTNNYVEGSKLAVSSNRITEAQFGINHGRRVGSAFVNIDLGMQQGIGALDAQ GNHDPRPGEADARYRKYTGTLSYLHPFQLWGENLSFTSLATGQRSEDVLFSSQRTSLGGSASVRGYKDEFLSGDSGGYWRNELRLTRPVTLDWLRPVFAE YGAAAGYDQGVIRNDRYNGNQHGRLSSNSFELFTRGQHVAASVTFAHSLERPDVIEREAPIYFRMDFFL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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