Pseudomonas syringae pv. syringae B64, PssB64_2760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTTGAGCAGCAACTGGCCTCGGCCGGCTTCAGTCTGCAACACAGCGCCATCCTGGCGCCGGCGGATGGCATCGCCGTCAATCTGGGCGTGCACACCGAA GGTGCGGTGGTGCGTGCCGGCGAAACCCTGCTGGAAATCGTCCCACAAGGCACACGGCTTGAAGTTGAAGGGCGGCTGCCAGTGCAACTGATCGACAAGG TCGCTAGCCATTTGCCGGTCGACATTCTGTTTACCGCGTTCAATCAAAGCCGTACGCCGCGGGTTTCCGGCGAGGTGAGCCTGATTTCTGCCGACCAGAT GCAGGATGAAAAAACCGGCCAGCCGTATTACGTCCTGCGCACCTCGGTGGGCGACGCGGCGCTGGAAAAACTCAACGGGCTGGTGATCAAACCCGGCATG CCCGCTGAAATGTTCGTGCGCACGGGTGAACGCTCGCTGCTCAATTACCTGTTCAAACCTTTGCTGGACCGTGCCGGCTCCGCGTTGACGGAGGAATAGG
|
|
| DNA Sequence for Gene |
>PssB64_2760
ATGTTTCGCCATCCCCTTAAAGCCGCTTTGCTGACGGCCATCCTGATGGGTACTGCACCCTTGAGTCAGGCCATGGGCCCGTTTCAGGTCTATGAACTGG CGCTTCGCAATGACCCGGTTTATCTGGGCGCGCTGAAGGAGCGTGACGCGGGTCTGGAAAACCGGGTGATCGGTCGTGCCGGCTTGTTGCCCCGCGTGTC ATACAGCTACAACAAGGGGCGCAACGATTCCAAGGCGACCCTCAAAGGCAGCACTCAAGACACCACTGATCATCGCCACTACAACAGCTTTGGTTCGAGC CTGACGGTTCAGCAGCCATTGATCAATTACGAGGCGTACGCCAATTACCGCAAGGGACTGGCCCAGGCGCTGTTTGCCGACGAGACCTTTCGCAGCAAGA GCCAGGAGTTACTGGTGCGGGTGTTGACCCTGTACACCCAGGCACTCTTCGCCCAGGACCAGATCAATATCGCGCGTGCCAAGCAGCAGGCGTTCGAACG CCAGTTCGCGCAGAATCGGCAGATGTTCGAGCAGGGAGAGGGCACACGCACCGACATTCTCGAAGCGGAGTCGCGCAACGAACTGGCGATTGCCGAGCAG ATCGAAGCCAGCGATGAGCAGGACGCGGCCTTGCGCGAGCTGGCCGCGCTGCTGGGCGAGCCGAGTATCGATGTTGCGCAGCTGGAGCCCTTGAGGGACA GCTTTCAGGCTTTGGTCCTCGCACCGTCCAGCTTTACCGAGTGGCATGCGCTGGCGATGGCCAACAGCCCGATCCTGGCTTCGCAGCGTCAGTCCCTGGA AGTGGCGCGATACGAGGTGGAGCGCAATCGCGCGGGGCATCTGCCGACGGTGAATGCTTACGCAAGTATCCGTCAGAACGAATCGGACAGCGGCAACATC TACAATCAGCGTTACGACACCAACACGATAGGCATCGAGCTCAGTCTTCCGCTGTACGCCGGAGGGGGCACCAGCGCCTCGGTGCGCCAGGCCAACAGCA AGCGCGAGCAGGCTGAATACGAGCTGGAGGGCAAGACCCGCGAAACCCTGATCGAGCTGCGTCGCCAGTTCAACGCCTGTGCGTCAGGGGTGGGCAAGTT ACGCGCCTACCAGAAGGCGCTGATCTCGGCGCAGGCGCTGGTCGAATCGACCCGCCAGAGCATTCTGGGTGGCGAGCGCATCAGCCTGGATGCCCTCAAC GCCGAGCAGCAGCTTTACAGTACTCGTCGCGATCTGGCGAAAGCCCGTTACGACTATTTGATGGCCTGGATCAAGCTGCATTACTACGCGGGCACCTTGC GTGACACCGATCTGGCGCGCATCGACGAGGCGTTCGTGGTGGCGCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCAAGCCTGCCTGGCGAAGCGTTGCAGTGAAAAGGCCGAGAGATCCACATCGCTCTCGCCATCAATACAGCGTTGCGCCAGCGCCAGTCCGAGCCCGGCT GAATGCTTGAAACCGTGGCCGGAACAGGCCGAGACTACCGTCACGTTTTTCAGGTGCGGGTGTTCATCGATGATGAAGTGGCAGTCCGGCGTCACGGTAT AGGCGCACACCGAAGACTTGACCACCTTTGGCGTCAGTCCCGCAATCCTGCCTTGCACCTGAGTGCGGAACATTTCCTGTTCTTCCCGCGCGGTAATGGT GCGGTCCAACCGGTCAGCCGCTGACGTCTCGAGGTATTGCTCAGTGGCGACCTTCATGCTGTTTTCACCGGGCAGCGGCGGGAAGCCGTAATTGACATCG GCGTCGCCCGGCCCGTGAATCAGGATGAAGCTTGGCGACGGCGCAGCAAAGGCAGCCTCATGCTGCAACTCGAACCAAAACAGCTTTTGCCGGCACACCC
|
|
| Amino Acid Sequence |
>Type I secretion outer membrane protein AprF
MFRHPLKAALLTAILMGTAPLSQAMGPFQVYELALRNDPVYLGALKERDAGLENRVIGRAGLLPRVSYSYNKGRNDSKATLKGSTQDTTDHRHYNSFGSS LTVQQPLINYEAYANYRKGLAQALFADETFRSKSQELLVRVLTLYTQALFAQDQINIARAKQQAFERQFAQNRQMFEQGEGTRTDILEAESRNELAIAEQ IEASDEQDAALRELAALLGEPSIDVAQLEPLRDSFQALVLAPSSFTEWHALAMANSPILASQRQSLEVARYEVERNRAGHLPTVNAYASIRQNESDSGNI YNQRYDTNTIGIELSLPLYAGGGTSASVRQANSKREQAEYELEGKTRETLIELRRQFNACASGVGKLRAYQKALISAQALVESTRQSILGGERISLDALN AEQQLYSTRRDLAKARYDYLMAWIKLHYYAGTLRDTDLARIDEAFVVAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|