Pseudomonas syringae pv. syringae B64, PssB64_2023
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 747 | 763 | - |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 240 | 717 | 0.0 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 291 | 447 | 1.94258E-64 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 290 | 445 | 4.8E-50 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 469 | 707 | 4.4188E-110 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 466 | 702 | 5.7E-76 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 134 | 183 | 3.1E-11 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 465 | 717 | 5.23E-88 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 461 | 722 | 9.6E-99 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 460 | 707 | 8.9E-107 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 73 | 127 | 2.3E-13 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 280 | 453 | 1.7E-58 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 285 | 451 | 9.9E-48 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 295 | 452 | 6.54E-51 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 461 | 717 | 6.8E-89 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 719 | 763 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 719 | 737 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 286 | 448 | 2.8E-48 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 279 | 450 | 3.2E-62 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.