Pseudomonas syringae pv. syringae B64, PssB64_1686
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCTGTTGGAAACGTTTCTCCGGAAACGCTTCCTTGCACAAAAGGATTGCCCACATGGCACTCAGCGTTGAAGAAAAAGCTCAGATCGTAACCGACTAC CAGCAAGCTGTTGGTGATACTGGTTCGCCAGAAGTGCAAGTTGCACTGCTGACCGCCAACATCAACAAACTGCAAGGCCACTTCAAGGCCAACGGTAAGG ACCACCACTCGCGTCGTGGTCTGATCCGTATGGTAAACCAGCGTCGCAAGCTGCTGGATTACCTGAAAGGTAAGGACGTTAGCCGTTACAGCGCCCTGAT CGGTCGTCTGGGTCTGCGTCGCTAATAACGACGTTGCTAGAGGTTGGTTGTCTGTCACGATCCGTCGGGTTTTCCCGGTGGTTCTGGCAGGCTCCCAGCC TCAAGTTTTATCTGGGCTGTGGAAGGGGCCGATTCCCCACGCTGCCCAAGAATTCGCAAGAAACCAGTTCCCCAAGAGCCACAAAGAAAGGTAGGAAACC
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| DNA Sequence for Gene |
>PssB64_1686
GTGAACCCGGTAATCAAAAAGTTTCAGTTCGGTCAATCGACCGTAACCCTCGAGACAGGCCGTATCGCCCGTCAAGCCTCTGGTGCAGTATTGGTCACCG TTGACGACGACGTCAGCGTACTCGTGACTGTGGTCGGCGCCAAACAGGCTGACGCTGGCAAAGGCTTCTTCCCTCTGTCCGTGCACTATCAGGAAAAAAC CTACGCTGCCGGCAAGATTCCTGGCGGTTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAAACCCTGACTTCGCGCCTGATCGACCGTCCGATCCGC CCGTTGTTTCCAGAAGGCTTCATGAACGAAGTGCAGGTTGTCTGCACCGTCGTCTCCACCAGCAAGAAAATCGATCCGGACATCGCTGCGATGATCGGTA CTTCGGCTGCCCTGGCCATCTCCGGTATCCCGTTTGACGGTCCGGTCGGTGCTGCCCGCGTTGCTTTCCACGAAAGCACCGGCTACCTGTTGAACCCTAC TTACGAGCAGTTGCAGGCTTCGAGCCTGGACATGGTCGTTGCCGGTACTTCCGAAGCCGTTCTGATGGTTGAGTCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTGGGCGCTGTGCTGTTCGCGCATGACGAGTTCCAGGTCGTGATCAACGCCATCAAGGAACTGGCTGCCGAAGCCGCCAAGCCTACCTGGGCCT GGCAGCCTAAGCCTGAAGCGACTGAACTGCTGAGCGCTATCCGCTCCGAGTTCGGCGAAGCGATCTCCCAGGCTTACACCATCACCGTCAAAGCCGACCG TTATGCGCGTCTGGGCGAGCTGAAAGATCAGATCGTTGCCAAACTGGCTGTGGAAGAAGGCAGTCCGTCTGCCAGCGAAGTCAAAGCCGCTTTCGGCGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTCAACGGCAAGCCGCGTATCGATGGCCGTGACACCCGCACCGTTCGTCCTCTGAACATCGAAGTCGGCG TTCTGCCAAAGACTCACGGTTCGGCACTGTTCACCCGTGGCGAAACTCAGGCGCTGGTCGTTGCCACGCTGGGTACTGCACGTGACGCACAGCTGCTCGA TACCCTCGAAGGCGAGAAAAAAGACCCCTTCATGCTGCACTACAACTTCCCTCCGTTCTCGGTGGGCGAGTGTGGTCGCATGGGCGGTGCAGGTCGTCGT GAAATCGGTCACGGCCGTCTGGCCCGTCGCAGTGTCCAGGCCATGCTGCCAGGCGCTGACGTGTTCCCGTACACCATCCGCGTCGTGTCGGAAATCACCG AGTCCAACGGCTCCAGCTCCATGGCTTCGGTCTGCGGTGCTTCCCTGGCTCTGATGGACGCTGGTGTGCCGATGAAGGCGCCGGTTGCCGGTATCGCCAT GGGTCTGGTCAAGGAAGGCGAGAAGTTCGCGATTCTGACCGACATCCTGGGTGACGAAGACCACCTGGGTGACATGGACTTCAAGGTAGCCGGTACCTCC AAAGGTGTTACCGCGCTGCAGATGGACATCAAGATCAAAGGCATCACCGAAGAAATCATGGAGATCGCCCTGGGCCAGGCCCTGGAAGCTCGCCTGAACA TCCTCGGCCAGATGAACCAGATCATCGGTCAGTCGCGTAACGAACTGTCGGCCAACGCTCCGACCATGATCGCGATGAAGATCGACACCGACAAGATCCG TGACGTGATCGGCAAGGGTGGCGCAACCATCCGTGCCATCTGCGAAGAGACCAAGGCTTCGATCGACATCGAAGACGACGGCTCGATCAAGATCTTCGGC GAGTCCAAGGAAGCGGCTGAGGCAGCACGTCAGCGCGTTCTGGGCATCACCGCAGAAGCGGAAATCGGCAAGATCTACGTCGGCAAGGTTGAGCGCATCG TCGATTTCGGCGCATTCGTCAACATCCTGCCGGGCAAGGACGGTCTGGTTCACATCTCGATGCTGAGCGATGCTCGCGTAGAGAAAGTGACCGACATCCT CAAGGAAGGTCAGGAAGTCGAAGTACTGGTACTGGACGTGGATAACCGCGGCCGTATCAAGCTGTCGATCAAAGACGTAGCCGCAGCGAAAGCGTCGGGC GTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGATCTGAGCGGTATGTGAAAAAGGGACTCTTCGGAGTCCTTTTTTTATGAGCGCAATTAGAGGCTTACCAATGGAGCATGCAAACTGCTCGGTGCAAA CATGCATCTTGCAAGCCCGGGTTTGCATGAACGGGCAATCTGCACGACTCAGCAAAATAACTAAAAAGCTAAGCAATTGATTTTAAACGTTATTTTTACT AGCTTGCTTTTGGCACACCGCTTGCGATATACCAGTTAACCCTGCCACCACATGCTGGTGCAGATTTTGAGAAAAACAGGAGTTATCGTATGAAGAAGTT CGCTATTGCCGCTGCTACCGCTACTGCCCTGACTCTGACCATGGCCAACGCTGCTTTCGCACAGACCTCGGCCCAAGCGCCAATGGTTCTGGCATCTAAC ACCACTACTCAAGAAGTCAAAGAAGATACTTCTGATACCTGGATCACCACCAAAGTCAAAGCCGACCTGCTGACCGAAAAAGGCATCCCAGGCTCGGACA
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEAKELTED QMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGE IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTS KGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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