Pseudomonas syringae pv. syringae B64, PssB64_1589

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 465 561 4.60664E-4
CDD cd00130 PAS IPR000014 PAS domain 585 701 7.47363E-5
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 832 1003 1.3E-44
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 561 702 1.77E-17
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1017 1264 4.05E-92
SMART SM00091 pas_2 IPR000014 PAS domain 443 512 1.6
Pfam PF00563 EAL domain IPR001633 EAL domain 1018 1253 2.0E-76
SMART SM00086 pac_2 IPR001610 PAC motif 521 564 0.017
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 840 1008 1.1E-60
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 272 429 1.2E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 576 713 1.5E-22
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 440 569 5.1E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 701 824 6.93E-23
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1013 1267 4.1E-102
Pfam PF13426 PAS domain IPR000014 PAS domain 724 825 5.0E-16
SMART SM00091 pas_2 IPR000014 PAS domain 576 642 0.0054
Pfam PF00989 PAS fold IPR013767 PAS fold 577 701 1.3E-7
SMART SM00267 duf1_3 IPR000160 GGDEF domain 826 1002 6.6E-67
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 837 998 3.7E-50
SMART SM00052 duf2_2 IPR001633 EAL domain 1012 1258 2.4E-127
Gene3D G3DSA:3.30.450.20 PAS domain - - 271 436 1.4E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 462 563 9.3E-4
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 572 711 9.5E-14
SMART SM00091 pas_2 IPR000014 PAS domain 712 778 2.5E-6
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 834 1000 4.8E-41
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1012 1268 5.4E-106
CDD cd01949 GGDEF IPR000160 GGDEF domain 838 1000 1.48165E-60
Gene3D G3DSA:3.30.450.20 PAS domain - - 714 839 2.4E-28
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 842 1003 3.06E-48
CDD cd00130 PAS IPR000014 PAS domain 721 823 1.61098E-9
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 428 562 9.83E-13
SMART SM00086 pac_2 IPR001610 PAC motif 662 704 8.6E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 716 832 1.0E-14
SMART SM00086 pac_2 IPR001610 PAC motif 784 826 1.5E-8
Gene3D G3DSA:3.30.450.20 PAS domain - - 442 575 1.2E-12
CDD cd01948 EAL IPR001633 EAL domain 1018 1258 6.40277E-114
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 713 1263 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.