Pseudomonas syringae pv. syringae B64, PssB64_1472
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGTGCTGCTTTACCTGCCTGAGGACATGAGCAATCCGAATCGGTCGAGCCAGGTCGTGGTGCCTGCCCTGCGCATTCTCGGCGTTGGCGCGCTGCTCG GTCCGGACCGCAACGGCAAGCCGGTGCAGGACCTCAACGCTGACGAACGCCTCAAACAGGAGCAGCAGCGGATCAACGCGCGAACCGTCACGGTCGCGGT GCCGCAAGCCCTGGTGGCGCGCCTGATGCTGGCGTCGCAAACCGGTGTGCTGCGTCTGGCCGTGCGCAGCGCCGACGAGGGCAACCTGCAGGATTACTGG GCCAACGAAGCCGGCGGCCCTGACGCTGCCGAGCGACTCGATTCAGCCAACCGTCAACTGGTCAGCTTCAGACAACTGAGCCTGGGCCCGGCCAGCGCGC CAACATCAGGCGCAACCCCGCGTACGTCTCGCGCTGTCGAGGTCATACGCGGTAACCAGATCACGCAACAAACTCCCTGATTGAGCAAGGATTGCATTTG
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| DNA Sequence for Gene |
>PssB64_1472
ATGAGCTGTTGTTCCGTGCCAGTTATAAAACCCCGTTTGCTGGCGTTAGTCATCGCAGCACTGTGCGCGCCAGGCGCGTGGGCCGCTTCGGGCAGTTGTG CCGGCCTAGCCGCGATGCCGGCGGCCGTGGAAATCGACCAAGGCATTCAAAAGGAGGTCCGCTCTGCGGTACCCATCACCCGCATCGCCGTGGGTGATCC GAAAATCGCCGATGTGCATGTCAACGGCACCGACGGTTTTCTGTTGACTGGCGTCGCGCAGGGGACGACCAGCCTGATGGTCTGGACGGCCTGCGCAAGT GCGCCGCGCCAGAGCATGGTCTTCGTGCGTGGCCGGGCGACGACCGCCATGGTCGAGAGTGTCACCGCGCCGTCTGCCGATGCTCAGTTACCCAGCCAGG TGCAGACTGACATCCGCTTTATCGAAGTCAGCCGCACCAAGCTCAAGGAGGCCAGCACCTCGATCTTCGGCAAAGGCTCGAGCAACTTTCTGTTCGGCGC GCCCGGCACGGTGCCGGGCGTCAACGTCACACCTGGCGCTGTGGGCGGCATAACGCCGAGCATTCCGCTGAACAACAGCAATTTCAATATCGTCTGGGGC GGTGGCAGCAGCAAGGTGCTGGGCATGATCAATGCCATGGAAAACAGCGGCTACGCCTACACCCTGGCACGCCCCAGCCTGGTCGCCCTCAACGGGCAAA GCGCGAGCTTCCTGGCCGGCGGCGAATTCCCGGTGCCGGTGCCCAACGGTGAAGGCAACGGTATCTCCATCGAGTACAAGGAGTTCGGCGTGCGCCTGAC CCTGACCCCGACTGTCGTGGGCCGGGACCGGATTCTGCTGAAGGTCGCGCCGGAAGTCAGCGAACTGGATTTCTCGGCCGGTATCACCATCGCCGGGACC ACCGTGCCCGCCCTCAACATCCGCCGTACCGACACCAGCATTGCGCTTGCCGACGGCGAGAGCTTCGTGGTCAGCGGCCTGATCAGTTCCAGCAACAGCG GTTCGGTGGACAAGTTTCCCGGCCTCGGCGACATCCCGATTCTCGGTGCCTTTTTTCGCAGTTCACAGATCCAGCGCGACGAGCGCGAACTGCTGATGAT CGTCACTCCGCATCTGGTCCAGCCACTGGCCGCCAACGCCCGGCTGCCGTCGCTGCCGGGTGAGGGGCTGCGCACCTATGACCCGAGCTTCCCGCGCCTG TATTTTCTGGAAAACGGCGATTTCGACCGCCGCGACGGGTTATCCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCAGAGCCTGAGCCAGACCTTCCTGGCAATCACCCGTAACAACACCGACCTGGAGTGGCTGCAAAGTGCTCTGGGTTCGTTGGGCCAGGTGGTCAGTGC CGGCACGGGCAGCCTCGACGACCTGCTGGCGCTGGTGGATGTGACGTTCGCCAGCGTGGTGTTCGTCGGCCTGGACCGTGAGCATTTGATGACCCAGAGC GCCCTGATCGAAAGTGCGCTGGAAGCCAAACCGATGCTGGCCATCGTTGCGCTCGGCGATGGCATGGATAACCAGCTGGTGCTCAATGCCATGCGCGCCG GAGCCAGGGATTTCGTTGCCTATGGCTCTCGCTCCAGTGAGGTCGCCGGCCTGGTCAGACGTCTGAGCAAGCGCCTGCCCGCCGTGACGCCCAACCCGAA CATGAGCGGCCTGTCGGTGCTGTATGGCGTACAAAGCGATGACGACGGGGCCTTGATCGCGACGCACCTGGCGATGGTCGTGCACAAGAGCGGGCAGCGC
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| Amino Acid Sequence |
>Flp pilus assembly protein, secretin RcpA/CpaC
MSCCSVPVIKPRLLALVIAALCAPGAWAASGSCAGLAAMPAAVEIDQGIQKEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACAS APRQSMVFVRGRATTAMVESVTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNSNFNIVWG GGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGT TVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEGLRTYDPSFPRL YFLENGDFDRRDGLSK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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