Pseudomonas syringae pv. syringae B64, PssB64_1259
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0046983 | protein dimerization activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0000160 | phosphorelay signal transduction system |
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0000155 | phosphorelay sensor kinase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF08448 | PAS fold | IPR013656 | PAS fold-4 | 339 | 447 | 2.7E-9 |
| Coils | Coil | Coil | - | - | 445 | 465 | - |
| Coils | Coil | Coil | - | - | 307 | 331 | - |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | IPR036890 | Histidine kinase/HSP90-like ATPase superfamily | 542 | 663 | 1.96E-18 |
| Gene3D | G3DSA:1.20.5.1930 | - | - | - | 443 | 525 | 1.6E-10 |
| PANTHER | PTHR24421 | NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED | - | - | 178 | 662 | 3.7E-55 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 344 | 454 | 7.02E-23 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 135 | 230 | 4.0E-40 |
| Gene3D | G3DSA:3.30.565.10 | - | IPR036890 | Histidine kinase/HSP90-like ATPase superfamily | 534 | 662 | 1.5E-28 |
| CDD | cd16917 | HATPase_UhpB-NarQ-NarX-like | - | - | 575 | 660 | 2.76388E-28 |
| SMART | SM00062 | AABind_6 | IPR001638 | Solute-binding protein family 3/N-terminal domain of MltF | 50 | 269 | 9.4E-15 |
| SMART | SM00387 | HKATPase_4 | IPR003594 | Histidine kinase/HSP90-like ATPase | 570 | 663 | 2.1E-6 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 332 | 398 | 2.9E-4 |
| Pfam | PF00497 | Bacterial extracellular solute-binding proteins, family 3 | IPR001638 | Solute-binding protein family 3/N-terminal domain of MltF | 59 | 268 | 1.4E-22 |
| CDD | cd01007 | PBP2_BvgS_HisK_like | - | - | 48 | 268 | 3.34979E-39 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 337 | 452 | 1.2E-13 |
| Pfam | PF07730 | Histidine kinase | IPR011712 | Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain | 466 | 532 | 2.3E-12 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 41 | 267 | 4.0E-40 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 51 | 269 | 4.35E-31 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 321 | 442 | 3.5E-21 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 351 | 442 | 2.67953E-7 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.