Pseudomonas syringae pv. syringae B64, PssB64_1149 (betA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGTGTTCACCGACTGCACCGACGAGATGACCATCGTGCGTGAAGAAATCTTCGGCCCGGTGATGAGCATCCTCGGTTACGACACCGAAGATGAAGTGG TGCGCCGCGCCAACGACACCGACTTCGGTCTGGCCGCTGGCATCGTGACCCGCGACCTGAACCGCGCCCACCGCGTGATTCATCTGCTGGAAGCCGGTAT CTGCTGGATCAACGCCTGGGGCGAGTCGGCGGCACAAATGCCGGTCGGCGGTTACAAACAGTCGGGCGTTGGTCGTGAGAACGGCATCAGCTCGCTGGCC CAGTACACGCGCATCAAGTCGGTACAGATCGAGCTGGGCGATTACGCCTCGGTTTTCTAAACACGTTTTCAGTGGCACGCGGCAGGCCTCAAGCAGACGC ACTCAAAAGCTGCCTGCCGCACCCCATTTTCACGAGTATCGCCTGGCTGCTTCTGCTTGCGGCCAAGGCTTGAAACTCGCAGCTCTATGAGGGAGCCTCT
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| DNA Sequence for Gene |
>PssB64_1149
|betA
ATGACAACTCAATCCGAATACGACTACATCATCATTGGTGCCGGCTCGGCCGGTAACACCCTGGCAGCCCGTCTCACCGAAGACGCAGGCGTCACTGTTC TGCTGCTCGAAGCCGGTGGTCCGGACTACCGTCTGGATTTCCGTACCCAGATGCCTGCCGCCCTGGCATTCCCGCTGCAGGGCCGTCGCTACAACTGGGC CTACGAGACCGAGCCAGAGCCGCACATGAACAACCGCCGGATGGAATGCGGTCGGGGTAAAGGCCTGGGCGGCTCATCGCTGATCAACGGCATGTGCTAT ATCCGCGGCAACGCGATGGACTACGATGGTTGGGCCAAGGAGCCGGGTCTCGAAGACTGGAGCTACCTCGATTGCCTGCCGTACTTCCGCAAGGCGGAAA CCCGCGACATCGGCCCGAATGACTACCACGGTGGTGAAGGTCCGGTCAGCGTGGCCACACCCAAGGCGGGCAACAATCCGCTGTTCCACGCGATGGTCGA GGCAGGCGTACAAGCCGGTTTCCCGCGCACTGACGACCTCAACGGTTACCAGCAGGAAGGCTTTGGTCCAATGGACCGCACCGTGACGCCTAATGGCCGT CGCGCCAGTACCGCCCGTGGTTATCTGGACGAGGCCAAGAAGCGCTCGACCCTGACTATCGTCACTCACGCGCTGACCGATCGCATTCTGTTCGAAGGCA AGCGTGCCGTCGGCGTGGCGTACCTGGTGGGCGACAGCGACACCCGCATCCAGGCCCGTGCCCGCAAGGAAGTGCTGCTGTGTGGCGGCGCAATCGCTTC GCCACAGATTCTCCAGCGGTCCGGCGTCGGCCCGGCCGAAGTGCTGAACAAGCTGGATATTCCGGTGGTTCATGACCTGCCGGGCGTAGGCCAGAACCTT CAGGATCACCTGGAGATGTACCTGCAGTACGCCTGCACCCAGCCAGTGTCGCTGTACCCTTCGCTGAAGTGGTGGAACCAGCCTGCCATCGGTGCCGAGT GGATGTTCCTCGGTACAGGTATCGGCGCGAGCAACCAGTTTGAAGCCGGTGGTTTCATTCGCTCCAGTGAAGCGTTCGAATGGCCGAACATTCAGTACCA CTTCCTGCCGGTCGCGATTAACTACAACGGCACCAAGGGCGTTCAGGAACACGGTTTCCAGGCTCACGTCGGCTCCATGCGTTCGCCGAGCCGTGGTCGT GTGCAGGTCAAATCCAAAGACCCGCGCGAGTACCCGAGCATCCTGTTCAACTACATGGCCAGCGAGCAGGACTGGCAGGAGTTCCGTGACGGCATCCGCC TGACTCGCGAGATCATGCAGCAACCGGCACTGGACCCGTACCGCGGTCGCGAAATCAGCCCCGGCATCGACGTGCAGTCCGACGAGGCGCTGGATCAGTT CGTGCGTGAGCATGCCGAAACGGCTTATCACCCGTCCTGCTCGTGCAAGATGGGCACCGACGAGATGGCGGTTGTCGATGGTCAGGGTCGCGTGCATGGC CTGCAGAGCCTGCGCGTGGTCGATGCCTCGATCATGCCGATCATCACCACCGGTAACCTGAATGCACCGACGATCATGATCGCCGAGAAAATCGCCGACA AGATTCGTGGTCGTCAGCCTCTGCCACGCAGCACGGCCGACTACTTCGTCGCAGGCGACAAGCCGGCACGCGGCAAGCCGCTGCGCGAGATCAGCCACCA GGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTAACGCCCAGGCGTCCTTCCGGGACGCCTTTCGTTGTGCATGCTCCAGCGTGGAATGTATTTCACACTGGAGCATTGGCACGATAGTTACGAGATTCT CGTTCCTCACGCTCCAGCAATGCATTTTCCTACGCTCCGCGTCGCAATGAGCGCGGAGCATAGTTACGAGCGCCGACTCGATTCAGACCCTCCTCCCGAC AGACGCGAATTGCCACTACCCCTCCGCTCTGCCACAATCGCGAATGATTCTCTTTAGTTAGAACTTTCTCATCGAGGCTATTCGTGTCGTCAGTCCCAAT CACTCATAGCGAGATCGTTGGTGCGCTGTATCGCGATCATCGCGGCTGGCTGCTGGCCTGGCTCAGACGCAATGTCGCCTGCCCGCAACGTGCTCAGGAT TTGAGTCAGGACACGTTCTTGCGTTTGCTGGGGCGCCATGAATTGCTTGCGCCCAGAGAGCCGCGTGCTTTCCTGGCAACCGTCGCCAAAGGGTTGATGT
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| Amino Acid Sequence |
>choline dehydrogenase
MTTQSEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCY IRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAETRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAGFPRTDDLNGYQQEGFGPMDRTVTPNGR RASTARGYLDEAKKRSTLTIVTHALTDRILFEGKRAVGVAYLVGDSDTRIQARARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNL QDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAEWMFLGTGIGASNQFEAGGFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSRGR VQVKSKDPREYPSILFNYMASEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDVQSDEALDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHG LQSLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRQPLPRSTADYFVAGDKPARGKPLREISHQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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