Pseudomonas syringae pv. syringae B64, PssB64_0069
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 127 | 271 | 7.10245E-44 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 126 | 271 | 1.6E-30 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 124 | 273 | 2.4E-24 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 296 | 536 | 3.3811E-114 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 129 | 282 | 5.49E-37 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 295 | 544 | 2.35E-89 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 297 | 531 | 7.5E-75 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 109 | 548 | 0.0 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 292 | 553 | 1.7E-100 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 108 | 280 | 1.1E-41 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 113 | 280 | 1.0E-36 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 291 | 546 | 5.6E-91 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 290 | 536 | 1.2E-111 |
| Coils | Coil | Coil | - | - | 284 | 304 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.