Pseudomonas plecoglossicida NB2011, L321_24641
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NB2011 genomic scaffold PT1_scaffold85, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAAGCCTTCAACATGCTCGAAAGCGGCCGCGCCGTGGCCTTCATGATGGACGACGCCCTCCTCGCCGGTGAAATGGCCAAGGCCCGCAAGCCGGCCGAC TGGGTCATCACCGGCACCCCGCAGTCGTACGAAATCTACGGCTGCATGGTGCGCAAGGATGACGCAGCGTTCAAGAAAGCGGTCGACGACGCCATCGTTG CCTACTTCAAGTCGGGCGAAGTCAACAAGAGCTACGACAAGTGGTTCCAGCAACCGATTCCGCCAAAAGGCCTGAACCTGCAGTTCCCGATGAGCGACGA GCTGAAAAAACTGATCGCCGAGCCGACCGACAAGGCCGCGGACGAGAAGAAGTCCTGATCCTCAGATAGTGGCCTGGTGCGCAAGCGCACGAATCAATCC TGCAGGCCACTCATTAGTGTCTAACCTTTCATCCGAGGGCGCATGCCGCCCTTGGATGCTCGAAGGTGCCCGTGAAACAACCGTCTGAGGGGAAATCCCG
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| DNA Sequence for Gene |
>L321_24641
ATGAATTACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGCGTGGGCAGCGAAACCTATCTGGACTGGTACATCACCGGTTTGGGCTGGACCATCG CCATCGCCATCTCCGCCTGGATCATCGCGCTGCTGCTGGGCTCTGTGCTCGGCGTCATGCGTACCGTGCCGAACCGACTGGTCTCGGGCATCGCCACCGC CTATGTGGAACTGTTCCGCAACGTGCCGCTGCTGGTGCAGCTGTTCGTCTGGTACTTCCTGGTACCGGACCTGCTCCCCGAAGGCCTGCAGGAATGGTTC AAGCAGGACCTCAACCCGACCACTTCGGCGCTGATCAGCGTGGTCATCTGCCTGGGCCTGTTCACCGCCGCCCGCGTTTGCGAACAGGTGCGTACCGGTA TCCAGGCGCTGCCCAAAGGCCAGGAAGCCGCCGCCCGTGCGATGGGCTTCAGCCTGCCGCAGATCTACAACAACGTGCTGCTGCCGCAGGCCTACCGGAT CATCATTCCGCCGCTTACCTCCGAGTTCCTCAACGTGTTCAAGAACTCCTCGGTGGCATCGCTGATCGGCTTGATGGAGCTGCTGGCACAGACCAAGCAG ACTGCCGAGTTCTCGGCCAACCTGTTCGAGGCCTTCACCCTGGCCACGTTGATCTACTTCACCCTGAACATGGGGTTGATGCTGCTGATGCGCATGGTCG AGAAGAAAGTCTCGGTGCCGGGCCTGATTTCCGTGGGAGGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGACATGGATTTCAGCGAAATCATCCCGGCTTTGCCAGCCCTCTGGGAAGGCATGATCATGACCTTGCAGCTGATGGTCATGGGCGTGGTCGGCGGTA TCGTCCTCGGTACCCTCCTGGCCTTGATGCGCCTGTCGTCGAACAAGCTGATGTCGAACCTGGCGGGTGCCTACGTCAACTACTTCCGCTCGATCCCGTT GCTGCTGGTGATCACCTGGTTCTACCTGGCAGTGCCATTCGTGCTGCGCTGGATCACCGGTGAAGATACCCCGGTGGGGGCCTTCACCTCCTGCGTGGTG GCCTTCATGATGTTCGAGGCCGCCTATTTCTGCGAAATCGTGCGGGCTGGCGTGCAGTCGATCTCGAAGGGCCAGATGGGCGCCGCCCAGGCCCTGGGCA TGACCTACGGCCAGACCATGCGCCTGATCATCCTGCCCCAGGCCTTCCGCAAGATGACCCCGCTGCTGCTGCAGCAGAGCATCATCCTGTTCCAGGACAC
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| Amino Acid Sequence |
>polar amino acid ABC transporter inner membrane subunit
MNYNWDWGVFFKSTGVGSETYLDWYITGLGWTIAIAISAWIIALLLGSVLGVMRTVPNRLVSGIATAYVELFRNVPLLVQLFVWYFLVPDLLPEGLQEWF KQDLNPTTSALISVVICLGLFTAARVCEQVRTGIQALPKGQEAAARAMGFSLPQIYNNVLLPQAYRIIIPPLTSEFLNVFKNSSVASLIGLMELLAQTKQ TAEFSANLFEAFTLATLIYFTLNMGLMLLMRMVEKKVSVPGLISVGGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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