Pseudomonas plecoglossicida NB2011, L321_23601

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida NB2011 genomic scaffold PT1_scaffold85, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGGCTGACCAGGTGATCGACCTGATCAAGGCGGAGCAAGCCAAGGGCATCAGTCTGTCGCGGATCTTCCTCGCGGGGTTCTCCCAGGGCGGCGCCGTGG TCCTGCACACCGCCTATATCAGGTGGCAGGAAGCGCTGGGTGGGGTGATCGCCCTGTCCACCTATGCCCCGACCTTCACCGACAGTCACCAGCTGAGCGC CTGCCAGCAGCGCACCCCCGCCCTGTGCCTGCACGGTGTGCACGATTCGGTGGTGATCCCGGCCATGGGCCGGACGGCCTTCGAATACCTGAACACCTGG GGTGTCGCCGCGCGCTGGCACGAGTACCCCATGGAGCATGAAGTGGTGGTCGAGGAGTTGAGCGATATCCACGACTGGTTGAGCAAGCAGTTGCAATAAG CAAGGCTCGCCTGTAGTTGTGGGAGTATTCCGCTACGCTGCGCCCGGATCTTGCTTTACACTGCCGGGCGTACATTCCTTAACCAGTTGACGAGACGATC
DNA Sequence for Gene
>L321_23601
GTGCTCAAGGCACTCAAGAAAATATTCGCCAAGGGGGACGCCGCCCCTCAGGCCGTCGCGCCTGCTGCCGGCGTCACGCCGCCTGCGCCCGTCGAGCCAC CCGCGGCCCAGCCTCAGCCACCGCGCAAGGCACCCCACACCACGGCTCGCGACCAGGACCAGGTTGAAACGCCCGCCGCCGCACCGGCTGCCGAGAAACC GGCCAAGGACAAACCGCGCCGCGAACGCAAGCCCAAGCCCCAGGCCAGCCTGTGGAAGCCGGAAGACTTCGTGGTCGAGCCGCAGGAAGGCAAGACCCGC TTCCATGACTTCAAGCTCTCCAACGAGCTGATGCATGCCATCCACGACCTCGGTTTCCCGTACTGCACGCCGATCCAGGCCCAGGTACTGGGCTACACCC TGCGTGGCCAGGACGCCATCGGCCGCGCCCAGACCGGTACCGGCAAGACCGCCGCGTTCCTCATCTCGATCATCTCCCAGTTGCAGCAGACGCCACCGCC CAAGGAGCGTTACATGGGCGAGCCGCGCGCGCTGATCATCGCCCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCTGTCGCCCTGACCAAGTAC ACCGGCCTGAACGTCATGAGCTTCGTCGGTGGCATGGACTTCGACAAGCAGCTCAAGGCCCTGGAGGCCCGCCATTGCGACATCCTGGTGGCCACCCCAG GCCGCCTGCTGGACTTCAACCAGCGCGGCGAAGTGCACCTGGACATGGTCGAGGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCAT CCCCCAGGTACGGCAGATCATCCGCCAGACCCCGCCGAAGAGCGAACGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGAAGACGTGATGAACCTGGCC AAGCAGTGGACCACCAACCCGGCGATCGTCGAGATCGAGCCGGAGAACGTCGCCAGCGAAACCGTCGAGCAGCACGTCTACGCGGTGGCCGGCAGCGACA AGTACAAGCTGCTGTACAACCTGGTGACCCAGAACCAGTGGGAACGGGTGATGGTGTTCGCCAACCGCAAGGACGAAGTGCGGCGCATCGAGGAAAAACT GGTGCGCGACGGCATCAATGCCGCGCAACTGTCGGGGGACGTGCCGCAGCACAAGCGCATCCGTACCCTGGAGAGCTTCCGTGAAGGCCGCATCACCGTG CTGGTGGCGACCGACGTGGCTGGCCGCGGGATTCACATCGACGGCATCAGCCATGTGATCAACTTCACCTTGCCGGAAGACCCGGACGACTATGTGCACC GTATCGGCCGTACCGGCCGTGCGGGCAGCAGTGGTGTGTCGATCAGCTTTGCCGGCGAGGATGATTCCTACCAGCTGCCGGCGATCGAGGAGCTGCTGGG GCGTAAGATCAAGTGTGAAATGCCGCCGGATGAGCTATTGAAGCCAGTGCCGCGTAAACATCATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TATCGGGGCTGCTTTGCAGCCCAATCGCCGGCAAGCCGGCTCCCACACTTCGAGAACGGTGGAGGTCCTGTGGGAGCCGGCTTGCCGGCGATCCGGGGCA AAGCCCCGGCCAACCCCTTGACACCTACCAGCGCCCAGCCGCCTCCTGGTCACCCTGCTTCCCTTCCACCCACCTCGGCCCCTCCTGGGTATTTTCCTTC TTCCAGAACGGCGCCCGCGTCTTCAGGTAGTCCATGATGAAGTTGCAGGCATCGAACGCCGCCTGCCGATGGGCACTTGCCACGCCGACGAAGACGATCG GCTCACCCGGCTCCAGCGCGCCGATCCGGTGCAACACCTCGACCTTGAGCAACGGCCAGCGCTGCTCGGCCTCCACCACGATCTTGGCCAGCGCCTTCTC GGTCATGCCCGGATAGTGCTCGAGGAACATCCCGGCCACGTCGAGGCCATCGTTGAAATCACGCACATAACCCACGAAGCCGACCACAGCCCCCACGCCG
Amino Acid Sequence
>ATP-dependent RNA helicase RhlB
MLKALKKIFAKGDAAPQAVAPAAGVTPPAPVEPPAAQPQPPRKAPHTTARDQDQVETPAAAPAAEKPAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTR FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAVALTKY TGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLA KQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNQWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITV LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSYQLPAIEELLGRKIKCEMPPDELLKPVPRKHH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site