Pseudomonas plecoglossicida NB2011, L321_19317

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida NB2011 genomic scaffold PT1_scaffold82, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGTGTACAGGGATGACACATGAGTAACCAGGCCCGCCTGCTGCCTTCGCTGCTCGACCGACTGCTGGACGACCGTCCGTACCAGCCGGCCGAGCCTGCCG TGCAGCGCACCTGTTCGCTGGCCGAATACAAGGCGAGCATCGTCCGCGACCTGGAGGTACTGGTGAATACCCGCCAGTCCCTGATCGCCGACGAACTCGG CGGCTTCAGCCAGCTCGGTGGCTCCATCCTTGAATACGGCATGCCCGACTTCATCAGCCGCAGCGTGCTCGACCCGCAGGATCGCCGGCTCATCCAGCAG CAGCTGGAGCGGGCGATCAGCACCGGCGACCGGCGTTTTCGCCGGGTCCGCGTACAACTGCTGGCCCAGCAGAACGGCCACCGCATGTTGACCTTCCGGG TAGACGCCGTGCTGCGTCTGCAGGACATCAGCCGCCAGGTGTCGTTCGACGCCGTGCTGCAGGTCAACACCCAGGAATACAAAGTGCAGAACCTCAACTG
DNA Sequence for Gene
>L321_19317
ATGCTCGACGAACTGCTGCCCTACTACGAAAAGGAACTGTCGCACCTGCGCTTCCTCGGCCAGGAGTTCGCTGCGCAGTACCCGAAAATCGCCTCGCGCC TGCTGATCGAGGGCGACAACTGCGAGGACCCGCACACCGAGCGCCTGATCGAGGCGTTCTCGTTCCTGTCGGCGCGGGTGCATAAAAAGCTGGACGACGA GTTCCCGGAAATCGTCGAGTCGTTCCTCGAGGTGCTGTACCCGCACTACCTGCGCCCTACCCCGTCGATGTCGATCGCCGAGCTGAGCCTGGGCAAGCAG GAGAAAGTCACCGAGGCCTACCGCGTGGCCCGGCACACCGAGATGGTGGCCAATGCCGTCGAGGGCGTGGTGTGCAAGTTCCGCACCTGCTACCCGGTGG AGCTGTGGCCGATCGCCGTGCAACAGGCCTCGTTCGCCGAAATGGAATGCTCGGCCTTCAACGGCCACAGCGCCGACCTGGTGGCGCGCCTGCGCATTCG CCTGCAAGCCACCGGCGACGTGAAGTTCGGGCAAATGCAGATGGACCGGCTGCGCTTCTTCCTCGATGGCGAAGCGACGCTGATGCTGCAGCTGTACGAA CTGCTGTTCAACAACCTGGCCAAGGCCACCCTGAGTTTCCTGGACGAAGGCCGCCCGCGTGAAGTTGCCTTGCCACGCGATGCCCTGAAGGCCGTGGGCT ATGCCCGCGACGAAGGCCTGGTGGACTACTCCGAGCGCTCGTTCCTGGGCTATCGCCTGCTGCACGAGTACTTCACCTTCCCCGACAAGTTCATGTTCTT CGACCTCTCGGGGTTTGCCCGCATCCTGCAGGGCAAGACCATCGAGCAAGTGGAGATCAACTTCTACTTCAACGACTACGACCTCAGCGAGCGCCTGGCG CGGCTGACCCAGAACATCGGGCGCAACAACTTCAAGCTCAACTGCACGCCGATCATCAACCTGTTCCGCCAGCAGGCCGAGCCGATCAAGCTCACCCACA CCCAGCACGAATACCCGGTGACTCCGGACATCCGCCTGCACAACGCCGCCGAAGTGGTGTCGATCGACCGCGTGCGCCGGGTGCGCAAGCTCGGCGGCAT CGACCAGGTCGGCACCTGCCAGCCGTTCTTCGAGCCGCGTGGCGAGCAGGACCCGCACAACAGCTTCTGGATCGCCCGCCGGCGCAACCAGGGCGACGCC ACCGCCATGAGCATCCGCGTGGTCGACCGCGACCTGGAGCTGATCGACGGCAACAGCGACACCCTGAGCATCACCCTGACCTGCAGCAACCGCGACATCC CGCTGATGCTGCCGTTCGGTGGCGAGCATGGCGACTTCAACATCCCGGCCAACTCGGTGATCAAGGACATCCGCTGCCTGCGCAAGCCCACCGCCACGGT GCGCGTGCCGCTGGGCAAGGGCCTGATCTGGCGGTTGATCGCGCACCTGTCGCTCAACCACCTGTCGCTGGTCAGCCAGGGCCGCGAAGTGCTGCTGGAA CTGCTGTCGCTGTACAACTACCGCAACGTCTCGGCCATCCGCAAACAGATCAACGGCATCAAGGCCATCAGCAGCGAGCCGACGGTCGCCCGGATCGGCC ACCCGCGGCCGAACTTCGTGCGCGGCGTGGGCATCACCCTGACCTTCGACGAAAGCCAGTTCACCGGCAGCGGCGTGTACCTGTTCGGCATGGTGCTGGA CCACTTCTTCGGCCAGTACTGCTCGATGAACAGCTTCACCCAACTGACCCTGCGCACCCAACAACGAGAAAAGAGAGTCGTCCAATGGCCAGCACGTACT GGCGATCAGCCCCTGGTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGATCAGGCCAGAGCCGAGCCGCACCGATTCGAATTCTTCCAATTGGTGCGTCTGCTTCGCCTGCACTACAGCCGCACCGGCCGCATGGACCTGGCAAC GCGGCCGCACGAAGACCCGCTGCGTTTTCGCACCCAGCTGTCGCTGGCGTTCCCCGCCAGCGAAGTCAGCGACCTGCACTTCGAGCGCGAAGGCAAGGTG TCACCGGCCGGGCTGCCGCTGTCGGAAGTGCAGGTCACCTTCATGGGGCTGGTCGGGCCGTCCGGCGTGCTGCCGCGCCCTTATACCGAGCTGTTGCTGG AACGCCACGTGCAATACCGCGACGATGCCGCCCACGCGTTTCTCGACATCTTCTCGCACCGCATGACCACGCTGTTCTACGAAGCGTGGCAGAAGTACAA GTTCCATATCGAGCACGAGCGCAACGGCACCTCGGGCTTCGACGGCTACCTGCTCAACCTGGTGGGCCTGGGGCCGCGTGCCCAGGCGCTGAAGTTCGAA
Amino Acid Sequence
>type VI secretion protein
MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLYPHYLRPTPSMSIAELSLGKQ EKVTEAYRVARHTEMVANAVEGVVCKFRTCYPVELWPIAVQQASFAEMECSAFNGHSADLVARLRIRLQATGDVKFGQMQMDRLRFFLDGEATLMLQLYE LLFNNLAKATLSFLDEGRPREVALPRDALKAVGYARDEGLVDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILQGKTIEQVEINFYFNDYDLSERLA RLTQNIGRNNFKLNCTPIINLFRQQAEPIKLTHTQHEYPVTPDIRLHNAAEVVSIDRVRRVRKLGGIDQVGTCQPFFEPRGEQDPHNSFWIARRRNQGDA TAMSIRVVDRDLELIDGNSDTLSITLTCSNRDIPLMLPFGGEHGDFNIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLIAHLSLNHLSLVSQGREVLLE LLSLYNYRNVSAIRKQINGIKAISSEPTVARIGHPRPNFVRGVGITLTFDESQFTGSGVYLFGMVLDHFFGQYCSMNSFTQLTLRTQQREKRVVQWPART GDQPLV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site