Pseudomonas plecoglossicida NB2011, L321_15451
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NB2011 genomic scaffold PT1_scaffold78, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTTCCAGGGCCTTGAAACGACTAACTTTAGCCCTGTTCCCATTAGCACTTGCGTTGCAAGAAGGTAGTTTCAAAATGTCCAACAGTATGGGTATTGCCA GCGTTTTCGTTCTGTCTTCCCTGTTGTTGTCGCCCCTGGCCATGGCAGAAGAATCCCAGGCCTTTGTCGCCCGTAATGCAGAACTTGCCGCTGTTCATCA GGAAGCCCGCGAAGTCGTCGCACAGAAAGCCGACGCCTTGAAAGCACCGGAACAGACAGCCTCTAAAGTATCCGTCGAAGCCAACGCCGACAGCTGAGTT CACCTCGCTGCCGCCCGAGTTTTCCCTCGGCTACGTCATGGGCAGCACCGCTGCCGATATGTTAGCCTTTTAAAGCCGCTGCCGATCAGCGGCTTTTTTA TGTGCTTTGACGATCAGCCTGGTTGTTACGTCGCGAACAAGAAAGTTGCACATTCAAAAATAAAAACTGCCCCACCGTCAGACCAAAGGAGCTTGTACCG
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| DNA Sequence for Gene |
>L321_15451
GTGTCTTCTGCGTTTCGTTTTACCCCGCTGTTCATTGCATTGGCTGCAACGATGCCTGTCGCCGCCCAGGCAGATGAAGACAAGGCTGATGGCTTCATCG AAGGCTCGTCGTTCAACCTGCATTTGCGTAATGCCTATTTCAACCGCAACAACCTCAACCAAGGCGTGCGCGACAAGCGCGAGTGGGGCCAGGGGGCGGT CGCCCGATTCGAGTCCGGCTATACCCCTGGGGTAGTCGGCTTCGGCCTCGACGCCCATGCCATGCTGGGCCTGAAGCTCGACGGTGGTGGCGGCCATGCC GGTACCAGCATCCTGCCTTCGCACTTCAAGGACGACGGCGAGCTGGGCGCGGCGCCGCACTCGTTCTCCACCGCTGGCGCGGCGGTCAAGCTCAAGGCGT TCGACACCGAGCTCAAGGCCGGTGACCTGTTCCTCACCAACCCGGTGATCGCCGGGGGTGAGTCGCGCATGCTGCCGCAGACCTTCCGTGGCGTGAGCCT GACCAACACCAGCATCGACGGCCTGCTGCTCGAAGGTGGCCAGGTCAGCTTCACCAAGCCCTACAACCAGAGCGGCCACCGCCGTATCGACACCTACTAC GGTGCGCTGGACGAAGGCGACAAGAGCGAGCACCTGAACTGGGCAGGCGCCGCCTGGACCGGCACCGAGAACATCAGCGCCAACCTGTATGCGGCCGAGC TGAAGGACATCTGGAACCAGTACTACGCCGACTTCGACTACACCTACGTGGTCAACGACCTGGTCAGCCTCAACCCGGGCGTGCACTTCTACCACACCCA GGACACCGGCCAGGCGCTGCTGGGCGAGATCGACAACAACACCTACAGCCTGCATTTCACGGTCAATGCCGGCTATCACAGCGTTACCGCCGCCTACCAG CGGGTCAACGGCAACACGCCGTTCGACTACATCAACCTGGGTGACAGCGTGTACCTGGACAACTCGCGCATGTACTCCGACTTCAACGCACCCAACGAGC GTTCGTGGAAGCTGCAGTATGGCTACAACTTCGCCGGTGTCGGCATTCCCGGGCTGAGCACCATGGTCTCGTACTCGCGCGGCGAGGCGGACCTGAGCAA AGCCACCCAGGACACCCGCCACTACGACTACTACCGCGCCGATGGCAAGAACGCCATGCACTGGGAGCGTGACCTGGACGTGAAGTATGTGTTCCAGGAA GGCAACCTGAAGGATCTGTCGGTGCTGGTGCGCTATGCCACCCACCGCGGCAGCCAGGGTTATGCGTCGATCGACGACAACAGCGACAACGATGAACTGC GGGTGATCGTCGATTATCCATTGAACGTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCAGACCGCGGGCGGGGGCCTTGCCCCCGTTTCGCCGGCTTGCCGGCGATGGGCTGCAACGCAGCCCCCGGACGATTCCGTCGGACAAATCTTGTCCG ACAACTCCCGCTTCCCTAAAATGTCGCCGCCGCAAATGGCCCTGCCTCAGCAATAGCGCGCATGCCCACTCGATTACCGCGTCTCGCACTCTACAGGTCG CACCCCGAGCTGATCCTCAACCTGGGCAGTTGCCTTGCCGTGCTCGCCATCGTGGCCATCGTCAGCTACCTGCTGGCGCGCGAACGCGACAGCGTGGAGC AGTCGGCGATTCGCGCCTCGAACAACATCGTGCAACTGATCGAAAGCGACATCCTGCGCAATGTGGAACTCTACGATCAGTCCCTGCAGGGGCTGATCTG GGCAGTCAACCGCAAGGAGTTGCCCGAGATCCCTGGGCCACTGCGCCAACGCTTGCTGTTCAACGAAGCCTTCGTCGATAAACGCCGTGGGGACGTGCTG
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| Amino Acid Sequence |
>outer membrane porin
MSSAFRFTPLFIALAATMPVAAQADEDKADGFIEGSSFNLHLRNAYFNRNNLNQGVRDKREWGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHA GTSILPSHFKDDGELGAAPHSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGESRMLPQTFRGVSLTNTSIDGLLLEGGQVSFTKPYNQSGHRRIDTYY GALDEGDKSEHLNWAGAAWTGTENISANLYAAELKDIWNQYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGEIDNNTYSLHFTVNAGYHSVTAAYQ RVNGNTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYNFAGVGIPGLSTMVSYSRGEADLSKATQDTRHYDYYRADGKNAMHWERDLDVKYVFQE GNLKDLSVLVRYATHRGSQGYASIDDNSDNDELRVIVDYPLNVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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