Pseudomonas plecoglossicida NB2011, L321_06164

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida NB2011 genomic scaffold PT1_scaffold57, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGCAGGAAACCTACCTGCGGGTATCCCGCGCGCTCGGCGAACGACCCATCGAACATCTCGAACCCTTCGTGTTCCAGACCGCCCGCAACCTGGCCCTGGA CCATCTGCGCACGCGCCGGGTGCAATCGCGCATGCTGGTGGACGATGTGCCCGACGAGGTCCTGCACAATGTCGCGGCCCCACTGAGCAGCAGCGAAGAC GCCGCGCACGCCGAACGGTTGCTCAAGCATCTGAGCGTCAGCCTCAACCAGCTGACCGAGCGCCAGCAGCGGATCTTCATCCTCAGCCGCCTGCACGGCG CCAGCTACCTGGAGATCGCCGAACAGCTCAAGGTGTCGGCCAGCACGGTGCAGAAAGAACTGAAGCTGATCATGGGCATCTGCATGGGCGTGGCCGACCG CCTCGAATGACTTGACCGCCGGCCACCTGAGTGAGCCGAAGCCCTTGCCACACGGCGCCTTAGCCTTGATCATTCGAAAAAATCCATTCAAGGACCCACC
DNA Sequence for Gene
>L321_06164
GTGACCGACAGCCCTGTCACTCGCCCGCCTGCCGACGGGCCCGACGCCCGCGCCCGTGCGATGGACGAGGCACTGGACTGGCTCGTTCGCCTGCAATGCG CCACCGACGCCGATACCCTGGCCTTCGAGCAGTGGCTCAGTGCGGCCCCGGAAAACGCCAAGGCCTACGTCGAGGCCGAAGCCTTGTGGAATGGCGCGCC CCTGCGCCAGGCCGCCACCCGGATGCACCTGGACCGGCGGCGCTCCGTGCGAGGGCGCCTGCGTCGCCATTGGAAACCACTGGCCACCGCAGCCGTGCTG CTGGTCGGGCTGTTCACCTTCGGCAACCTACCGATGCGCCTGCAGGCCAACCACCTGACCGTGGTCGGCGAGCGCCAGCGCCTGCAGCTCGATGACGGTG CCAAGGTGTTGCTCAATACCGACTCGGCGTTCGCCAGCGACGTGCGAGAGGGCCGCCAGGTGGCGCGCCTGCTGCAAGGCGAGGCGTACTTCCAGGTGGC GGGTGGCGCGCAACTGCCCCTGGAGGTACAGGCCGGGCCGCTGCGCGCGCAGGTACGCGACACCGATTTCGCCGTGCGCTACCTCGATGGCGAGGCGCAG GTGCGGGTGCAACGCGGTGACGTCGACCTGCAGGCCGCCAGCGACCAGCACATTCGCCTCAGCGCCGGCGACAGCATCAGCGTCGGCCCGCAAGGCTTCG GCCAGCGCCAGCGCCCGGACATGCGCAAGGATCTGGCCTGGGTCGAAGGCCGGCTGGTGTTCGAGAACTGCCCGCTGAGCCAGGTACTGGCGGAAGTGCG CCGCTATTACCCAGGGTGGATCATCAACCGCAACGGCCACCTCGACGACATGGCCGTGACCGGCAACTACCGCCTCGACCAACCGCTGGAGACCTTGCGC GCACTGGCCCACATCACTTCAGCGCAGCTGCACGAATACCCGGCCGTGGTCATCCTCAACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCTGAAAATTATTTTTACGCGATCGCGCTCCCCCGCCCGTCTCGTTATAGCCAATGCAACTGATTCTTGTTTCAAAACAGGAACGGTCATACCTATAACA GTTTGCGCGTCAGGGAGCGCTTTCGATGTCCACAGGTCCAACACGCCCGTCCACTCTTCCCCGCCGTACAGGACAACTGTCCCTGCTGACCCTGGCATTG CTCGCCAGTGGTGCCTGCAGCCTGCCGGCCCTCGCCGCGGAGCCTACCCAGGCCAGCAGCAAGCGCATGGGCGACTACCGCTTCAACATCGCCCAGCAAC CGCTGGTGGAAGCCATCAACGCCTTCAGCCAGGTGACTGGCTGGCAGGTCGGCTTCAGTGCCGAACTCGCCGAAGGTGTGGCATCGCCGGGCGTACGCGG CGCCCTGGCGCCGGAAGCTGCGTTGAAACAGTTGCTGCAGGGCACCGGCCTGAACTACCGCAAGATCGGCAACGGCAATGTGGTGCTGGAACGTCAGTCG
Amino Acid Sequence
>anti-FecI sigma factor FecR
MTDSPVTRPPADGPDARARAMDEALDWLVRLQCATDADTLAFEQWLSAAPENAKAYVEAEALWNGAPLRQAATRMHLDRRRSVRGRLRRHWKPLATAAVL LVGLFTFGNLPMRLQANHLTVVGERQRLQLDDGAKVLLNTDSAFASDVREGRQVARLLQGEAYFQVAGGAQLPLEVQAGPLRAQVRDTDFAVRYLDGEAQ VRVQRGDVDLQAASDQHIRLSAGDSISVGPQGFGQRQRPDMRKDLAWVEGRLVFENCPLSQVLAEVRRYYPGWIINRNGHLDDMAVTGNYRLDQPLETLR ALAHITSAQLHEYPAVVILN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site