Pseudomonas plecoglossicida NB2011, L321_04006

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida NB2011 genomic scaffold PT1_scaffold47, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AAAAAGCTCAGATCGTTGCCGATTACCAGCAAGCCGCCGGCGATACCGGTAGCCCGGAAGTGCAGGTTGCTCTGCTGACCGCCAACATCAACAAGCTGCA AGGCCACTTCAAGGCCAACGACAAAGACCACCACTCCCGTCGTGGTCTGATCCGTATGGTCAACCAGCGTCGTAAGCTGCTGGACTACCTGAAGGGCAAA GACACCACTCGTTACAGCGCCCTGATCGGTCGCCTGGGCCTGCGTCGCTAATAGCGGCCTGGTCAGTGGTGTGCATGGCGTGTCGCATGCTTCGGGAACG CTGCCTGGCAGCGTTTTCGTTGGACACGTCACGCGTATCTCCGAGGTTGGCAGCCTGGCAATGCTGAGCGGATTTTCCGCTCGGCGCCAGGCTCCCAGCC TCGTGTTGTATCTGGACGGTCAATGGGGCCGATTCCCTGTTCTGCCCAAGAATTCGCAAGAAACCAGTTCCCCCAGAGCCACTGAAAAAGGTAGGAAACC
DNA Sequence for Gene
>L321_04006
GTGAACCCGGTAATCAAGAAATTCCAGTTCGGTCAATCGACCGTTACTCTCGAAACGGGCCGTATCGCCCGTCAGGCGACCGGCGCCGTGCTGGTGACCG TCGACAACGACGTTACCGTGCTGGTGACCGTGGTCGGTGCCAAGCAGGCAGACCCGGGCAAGGGCTTCTTCCCGCTGTCGGTCCACTACCAGGAAAAGAC CTACGCCGCTGGCAAGATCCCAGGTGGCTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAGACCCTGACCTCGCGCCTGATCGACCGTCCGATCCGC CCGCTGTTCCCTGAAGGCTTCATGAACGAAGTCCAGGTCGTCTGCACCGTGGTTTCCACCAGCAAGAAGACCGATCCGGACATCGCTGCGATGATCGGTA CCTCGGCTGCCCTGGCCATCTCCGGCATTCCGTTCGAAGGCCCGATCGGTGCTGCCCGTGTTGCTTTCCACGAGAGCACCGGCTACCTGCTGAACCCGAC TTACGAGCAGCTGCAGGCTTCGAGCCTGGACATGGTCGTGGCCGGTACCGAATCCGCTGTACTGATGGTTGAATCGGAAGCTCAAGAGCTGACCGAAGAC CAGATGCTGGGCGCCGTACTGTTCGCCCACGATGAATTCCAGTCGGTCATCCAGGCTGTCAAGGAACTGGCCGCCGAAGCTGGCAAGCCGACCTGGGACT GGAAACCGGCCGTTGCCAACACCGAGCTGTTCAACGCCATCCGCGCCGAATTCGGCGAAGGCGTTTCGCAGGGCTACACCATCACCGTCAAGGCCGACCG TTACGCGCGCCTGGGCGAGCTGCGCGATCAGGCGATCGCCAAGTTCTCCGGTGAAGAAGGCCAGCCTTCGGCTTCCGAAGTCAAAGAAATCTTCGGTGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTCAACGGCAAGCCGCGTATCGATGGTCGTGACACCAAGACCGTGCGTCCGCTGAACATCGAAGTCGGCG TGCTGCCGAAGACTCACGGTTCGGCGCTGTTCACCCGTGGCGAAACCCAGGCCCTGGTCGTCGCGACCCTGGGTACTGCCCGTGACGCCCAGCTGCTGGA CACCCTCGAAGGCGAGAAGAAAGACCCGTTCATGCTGCACTACAACTTCCCGCCGTTCTCGGTAGGCGAGTGTGGTCGCATGGGTGGTGCCGGTCGTCGT GAAATCGGTCACGGCCGTCTGGCCCGTCGTTCGGTCCAGGCCATGCTGCCTGCTGCTGACGTGTTCCCGTACACCATCCGCGTGGTATCGGAAATCACCG AGTCCAACGGCTCCAGCTCCATGGCTTCGGTCTGCGGTGCTTCCCTGGCCCTGATGGACGCCGGTGTGCCGATGAAGGCACCGGTTGCCGGTATCGCCAT GGGTCTGGTCAAGGAAGGCGAGAAATTCGCGGTCCTGACCGACATCCTGGGTGACGAAGACCACCTCGGCGACATGGACTTCAAGGTAGCCGGTACCGCC AAGGGCGTCACCGCGTTGCAGATGGACATCAAGATCAACGGCATCACCGAAGAGATCATGGAAATCGCCCTGGGCCAGGCCCTGGAAGCGCGCCTGAACA TCCTCGGTCAGATGAACCAGATCATCGGTGAGTCGCGTACCGAGCTGTCGGCCAACGCACCGACCATGATCGCGATGAAGATCGACACCGACAAGATCCG TGACGTCATCGGTAAAGGCGGCGCCACCATCCGCGCCATCTGCGAAGAAACCAAGGCCTCGATCGACATCGAAGACGACGGCTCGATCAAGATCTTCGGC GAAACCAAGGAAGCGGCCGAGGCAGCTCGCCAGCGCGTCCTGGGCATTACTGCCGAAGCCGAGATCGGCAAGATCTACGTGGGCAAGGTCGAGCGCATCG TCGACTTCGGCGCCTTCGTCAACATCCTGCCTGGCAAGGACGGCCTGGTGCACATCTCCATGCTGAGCGATGCTCGCGTAGAGAAAGTCACCGACGTGCT GAAAGAAGGTCAGGAAGTCGAAGTGCTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTTTCGATCAAGGACGTTGCCGCGGCCAAGGCCTCGGGC GTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGACTGACGCGCAACAGGAAAAGGGCCCTTCGGGGCCCTTTTTTATTTTGCCCTGAAACCTTTTGCGGACTTGCATCTTGCATGCAGCTTTTGCCGGCT GATTGCAAAATGCACGACGGCCGTTTGCCATCTACTTAGCTAAGTCCCTGATTTTCAAGGAAACAAGCGAAACGGGAAAGCTGGCACACGGCGTGCAACT ACACTGTTACCTGCCGCCAAGAGACACGGCGCAGACCTTTCAATAACAGGAGTGACCCACATGAAGAAGTTCGCCATTGCTGCCGCTACTGCTACCGCTC TGACCCTGACCATGGCTAACGCGGCTTTTGCCCAGCAGTCCACCCAGGCCCCGATGACGCTGGCGGCCGGTGAGATGGACAAAGCCCAGGAGGCGACCTC CGATACCTGGATCACCACCAAAGTGAAATCGGACCTGATGACTGAAAAGGGTATTCCAGGTACTGACATCAAGGTCGAGACCAACAAGGGTGTGGTTTCG
Amino Acid Sequence
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTESAVLMVESEAQELTED QMLGAVLFAHDEFQSVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEGVSQGYTITVKADRYARLGELRDQAIAKFSGEEGQPSASEVKEIFGE IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSVQAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGESRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDVLKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site