Strain | Pseudomonas putida NB2011 genomic scaffold PT1_scaffold47, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AAAAAGCTCAGATCGTTGCCGATTACCAGCAAGCCGCCGGCGATACCGGTAGCCCGGAAGTGCAGGTTGCTCTGCTGACCGCCAACATCAACAAGCTGCA AGGCCACTTCAAGGCCAACGACAAAGACCACCACTCCCGTCGTGGTCTGATCCGTATGGTCAACCAGCGTCGTAAGCTGCTGGACTACCTGAAGGGCAAA GACACCACTCGTTACAGCGCCCTGATCGGTCGCCTGGGCCTGCGTCGCTAATAGCGGCCTGGTCAGTGGTGTGCATGGCGTGTCGCATGCTTCGGGAACG CTGCCTGGCAGCGTTTTCGTTGGACACGTCACGCGTATCTCCGAGGTTGGCAGCCTGGCAATGCTGAGCGGATTTTCCGCTCGGCGCCAGGCTCCCAGCC TCGTGTTGTATCTGGACGGTCAATGGGGCCGATTCCCTGTTCTGCCCAAGAATTCGCAAGAAACCAGTTCCCCCAGAGCCACTGAAAAAGGTAGGAAACC
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DNA Sequence for Gene |
>L321_04006
GTGAACCCGGTAATCAAGAAATTCCAGTTCGGTCAATCGACCGTTACTCTCGAAACGGGCCGTATCGCCCGTCAGGCGACCGGCGCCGTGCTGGTGACCG TCGACAACGACGTTACCGTGCTGGTGACCGTGGTCGGTGCCAAGCAGGCAGACCCGGGCAAGGGCTTCTTCCCGCTGTCGGTCCACTACCAGGAAAAGAC CTACGCCGCTGGCAAGATCCCAGGTGGCTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAGACCCTGACCTCGCGCCTGATCGACCGTCCGATCCGC CCGCTGTTCCCTGAAGGCTTCATGAACGAAGTCCAGGTCGTCTGCACCGTGGTTTCCACCAGCAAGAAGACCGATCCGGACATCGCTGCGATGATCGGTA CCTCGGCTGCCCTGGCCATCTCCGGCATTCCGTTCGAAGGCCCGATCGGTGCTGCCCGTGTTGCTTTCCACGAGAGCACCGGCTACCTGCTGAACCCGAC TTACGAGCAGCTGCAGGCTTCGAGCCTGGACATGGTCGTGGCCGGTACCGAATCCGCTGTACTGATGGTTGAATCGGAAGCTCAAGAGCTGACCGAAGAC CAGATGCTGGGCGCCGTACTGTTCGCCCACGATGAATTCCAGTCGGTCATCCAGGCTGTCAAGGAACTGGCCGCCGAAGCTGGCAAGCCGACCTGGGACT GGAAACCGGCCGTTGCCAACACCGAGCTGTTCAACGCCATCCGCGCCGAATTCGGCGAAGGCGTTTCGCAGGGCTACACCATCACCGTCAAGGCCGACCG TTACGCGCGCCTGGGCGAGCTGCGCGATCAGGCGATCGCCAAGTTCTCCGGTGAAGAAGGCCAGCCTTCGGCTTCCGAAGTCAAAGAAATCTTCGGTGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTCAACGGCAAGCCGCGTATCGATGGTCGTGACACCAAGACCGTGCGTCCGCTGAACATCGAAGTCGGCG TGCTGCCGAAGACTCACGGTTCGGCGCTGTTCACCCGTGGCGAAACCCAGGCCCTGGTCGTCGCGACCCTGGGTACTGCCCGTGACGCCCAGCTGCTGGA CACCCTCGAAGGCGAGAAGAAAGACCCGTTCATGCTGCACTACAACTTCCCGCCGTTCTCGGTAGGCGAGTGTGGTCGCATGGGTGGTGCCGGTCGTCGT GAAATCGGTCACGGCCGTCTGGCCCGTCGTTCGGTCCAGGCCATGCTGCCTGCTGCTGACGTGTTCCCGTACACCATCCGCGTGGTATCGGAAATCACCG AGTCCAACGGCTCCAGCTCCATGGCTTCGGTCTGCGGTGCTTCCCTGGCCCTGATGGACGCCGGTGTGCCGATGAAGGCACCGGTTGCCGGTATCGCCAT GGGTCTGGTCAAGGAAGGCGAGAAATTCGCGGTCCTGACCGACATCCTGGGTGACGAAGACCACCTCGGCGACATGGACTTCAAGGTAGCCGGTACCGCC AAGGGCGTCACCGCGTTGCAGATGGACATCAAGATCAACGGCATCACCGAAGAGATCATGGAAATCGCCCTGGGCCAGGCCCTGGAAGCGCGCCTGAACA TCCTCGGTCAGATGAACCAGATCATCGGTGAGTCGCGTACCGAGCTGTCGGCCAACGCACCGACCATGATCGCGATGAAGATCGACACCGACAAGATCCG TGACGTCATCGGTAAAGGCGGCGCCACCATCCGCGCCATCTGCGAAGAAACCAAGGCCTCGATCGACATCGAAGACGACGGCTCGATCAAGATCTTCGGC GAAACCAAGGAAGCGGCCGAGGCAGCTCGCCAGCGCGTCCTGGGCATTACTGCCGAAGCCGAGATCGGCAAGATCTACGTGGGCAAGGTCGAGCGCATCG TCGACTTCGGCGCCTTCGTCAACATCCTGCCTGGCAAGGACGGCCTGGTGCACATCTCCATGCTGAGCGATGCTCGCGTAGAGAAAGTCACCGACGTGCT GAAAGAAGGTCAGGAAGTCGAAGTGCTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTTTCGATCAAGGACGTTGCCGCGGCCAAGGCCTCGGGC GTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCGACTGACGCGCAACAGGAAAAGGGCCCTTCGGGGCCCTTTTTTATTTTGCCCTGAAACCTTTTGCGGACTTGCATCTTGCATGCAGCTTTTGCCGGCT GATTGCAAAATGCACGACGGCCGTTTGCCATCTACTTAGCTAAGTCCCTGATTTTCAAGGAAACAAGCGAAACGGGAAAGCTGGCACACGGCGTGCAACT ACACTGTTACCTGCCGCCAAGAGACACGGCGCAGACCTTTCAATAACAGGAGTGACCCACATGAAGAAGTTCGCCATTGCTGCCGCTACTGCTACCGCTC TGACCCTGACCATGGCTAACGCGGCTTTTGCCCAGCAGTCCACCCAGGCCCCGATGACGCTGGCGGCCGGTGAGATGGACAAAGCCCAGGAGGCGACCTC CGATACCTGGATCACCACCAAAGTGAAATCGGACCTGATGACTGAAAAGGGTATTCCAGGTACTGACATCAAGGTCGAGACCAACAAGGGTGTGGTTTCG
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Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTESAVLMVESEAQELTED QMLGAVLFAHDEFQSVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEGVSQGYTITVKADRYARLGELRDQAIAKFSGEEGQPSASEVKEIFGE IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSVQAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGESRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDVLKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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