Pseudomonas otitidis LNU-E-001, CR65_RS0126450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas otitidis strain LNU-E-001 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGATCTTCCGCGCCCGCCAGTTGCGCCAGGACGCCCAGCAGCAACGCCACGCCGAACTGCTCGGTCGTCTGCTCGCCTAAATCGGCTCTTCCATAAAGAT TGGCGATTTTTTAGACTATTCAGTCCGCCCGGCAAACGTCGGGCTCACTTTTCGTTACGAGGAACACCATGGCCCGCGTCACCGTTGAAGACTGCCTGGA CAACGTCGATAACCGTTTCGAGCTGGTCATGCTCGCCACCAAGCGCGCCCGTCAGCTGGCTACCGGCGGCAAGGAGCCGAAAGTGGCCTGGGAAAACGAC AAGCCGACCGTCGTCGCCCTGCGCGAGATCGCTTCCGGCCTGGTCGATGAGAACGTCGTCCAGCAGGAAGACATCGTCGAGGACGAACCGCTGTTCGCAG CGTTCGACGACGAGGCCAACACCGAGGCCCTGTAAGCCATGGCCTCGGCTCGACGTCGCCTGCGAGCGCCGCAACCCGCCTACGGGCAGGGGGTGAACCC
|
|
| DNA Sequence for Gene |
>CR65_RS0126450
TTGCCGGGCATAGACGCCTTCGCCGACAGACTGTCGAGCTACCTCGGGCCGGACCAGGTCAACCTGGTCCGCCGCGCCTACTACTACGCCGAGCAGGCCC ACGACGGGCAACGCCGCCGCAGCGGCGAACCGTACGTGACCCACCCGCTGGCGGTCTCCAACATCCTCGCCGACATGCACATGGACCATCAGAGCCTGAT GGCCGCGATGCTGCACGACGTGATCGAGGACACCGGCATCGCCAAGGAAGCGCTCACCGCGCAGTTCGGCGAGACGGTTTCGGAACTGGTCGACGGGGTC AGCAAGCTGACCCAGATGAACTTCGAGACCAAGGCCGAGGCCCAGGCCGAGAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGACATCCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTCGAGGTGCTGTCCGGCGAAAAGCGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTACGC GCCCATCGCTAACCGCCTGGGCATGCACACCATGCGCGTGGAGTTCGAGGACCTAGGTTTCAAGGCCATGCACCCGATGCGCGCCGAGCGCATCCGCCAG GCGGTGAAGAAGGCCCGCGGCAACCGCCGCGAGATCGTCGGCAAGATCCAGGAGTCGCTGGTCAACTGCCTCGCCCGCGAAGGCATGGAAGGCCAGGTGA TCGGCCGCGAGAAGCACCTCTACAGCATCTACCAGAAGATGCGCGGCAAGCGTAAGGCGTTCAACGAGATCATGGACGTCTACGCCTTCCGCATCATCGT CGACAAGGTCGATACCTGCTATCGCGTGCTGGGCGCCGTGCACAGCCTGTACAAGCCGTTCCCCGGACGCTTCAAGGACTACATCGCGATTCCCAAGGCC AACGGCTACCAGTCGCTGCATACCACCCTGTTCGGCATGCACGGGGTGCCCATCGAGATCCAGATCCGTACCCGCGAGATGGAAGAGATGGCCAACCACG GGATCGCCGCGCACTGGCTGTACAAGTCCAACGACGAGACGCCCAAGGGCACCCATGCCCGCGCCCGGCAATGGGTGAAGGGCGTGCTGGAACTGCAGCA GCGCGCCGGCAACTCGCTGGAATTCATCGAGAACGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAGGGCCGCATCATGGAACTG CCCAAGGGTTCCACCGCGGTCGACTTCGCCTACGCGGTGCACACTGACGTCGGCAACAGTTGCATCGCCTGCCGCATCAACCGTCGCCTGGCGCCGCTCT CCGAGCCGTTGCAGAGCGGCCAGACGGTGGAAATCGTCACCGCCCCGGGCGCCCGGCCGAACCCGGCCTGGCTGAGCTTCGTGGTCACCGGCAAGGCGCG CACCCATATCCGCCATGCGCTCAAGCTGCAACGCCGCTCCGAGTCGATCAACCTCGGCGAGCGCCTGCTGAACAAGACCCTTACCGGCTTCGACAGCCAC CTCGAGAAGATTCCCCAGGAACGCATCCAGGCCGTGCTCGCCGAGTACCGCATGGAAGTCTTCGAGGACCTGCTGGAAGAGATCGGCCTGGGCAACCGCA TGGCCTACGTGGTCGCCCGCCGCCTGCTGTCCAGCGAGGGCGAGGAAGCGCCAAGCGCCGAGGGTCCGCTGGCGATCCGCGGCACCGAAGGCCTGGTCCT GAGCTACGCCAAGTGCTGCACGCCGATTCCCGGCGACCCGATCGTTGGCCACCTGTCCGCCGGCAAGGGCATGGTGGTGCACCTGGAAAGCTGCAAGAAC ATCAGCGAAGTACGCCACAACCCGGAAAAATGCATCCAGCTCAGCTGGGCCAAGGATGTCACCGGCGAATTCAATGTCGAACTGCGCGTCGAGCTGGAGC ACCAGCGTGGCCTGATCGCCCTGCTCGCCACCAGCGTCAACGCGGCCGACGGCAACATCGAGAAGATCAGCATGGACGAGCGCGACGGCCGCATCAGCGT GGTCCAGCTGGTCGTCAGCGTGCACGATCGCGTCCACCTGGCCCGCGTCATCAAGAAGCTGCGCGCCCTCAAGGGAGTGATCCGGATCACCCGCCTGCGT AGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCGCTTTTTCCTGTGTCATCCGGCGCCCCCGCGCCCACTCGATTTCAGCAAGGAGTTCCCATGACCAAGACCGTTATCCACACCGACAACGCCCCGGCC GCCATCGGCACCTACTCCCAGGCCATCAAGGCCGGCAATACCGTCTACGTGTCCGGGCAGATCCCGCTGGACCCGAAGACCATGGAACTGGTGGAAGGCT TCGAGGAGCAGACCGTCCAGGTGTTCGAGAACCTCAAGGCGGTGATCGAGGCTTCCGGCGGCTACCTGCACGACGTCGCCAAGCTGAACATCTTCCTCAC CGACCTGTCGCACTTCGCCAAGGTCAACGAGATCATGGGCCGCTACTTCACCCAGCCCTACCCGGCGCGCGCCGCTATCGGCGTAGCCGCCCTGCCGAAG GGCGCACAGGTGGAAATGGACGCCATCGTCGTCCTCGAGTAAGCCGGATGTTCGCGACGGGGCCCAAGGCCCCGTCGCTCTGCATGGAGTAGCACGATGC
|
|
| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPGIDAFADRLSSYLGPDQVNLVRRAYYYAEQAHDGQRRRSGEPYVTHPLAVSNILADMHMDHQSLMAAMLHDVIEDTGIAKEALTAQFGETVSELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHTMRVEFEDLGFKAMHPMRAERIRQ AVKKARGNRREIVGKIQESLVNCLAREGMEGQVIGREKHLYSIYQKMRGKRKAFNEIMDVYAFRIIVDKVDTCYRVLGAVHSLYKPFPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANHGIAAHWLYKSNDETPKGTHARARQWVKGVLELQQRAGNSLEFIENVKIDLFPDEVYVFTPKGRIMEL PKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGQTVEIVTAPGARPNPAWLSFVVTGKARTHIRHALKLQRRSESINLGERLLNKTLTGFDSH LEKIPQERIQAVLAEYRMEVFEDLLEEIGLGNRMAYVVARRLLSSEGEEAPSAEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLESCKN ISEVRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLATSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALKGVIRITRLR S
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|