Pseudomonas otitidis LNU-E-001, CR65_RS0105875
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas otitidis strain LNU-E-001 contig_64, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGATTCTCGCCGCCATCGAGCGGGCGCAAGGCGAGGGCGCGACCCTGCTCGGCGGTGGCCGCCAGTTGACGATCAACGGTTCGGACAACTTCATCGAACC GACCCTGTTCGGCGACGTACGCCCGGACATGCAGCTGGCCCGCGAGGAAATCTTCGGTCCGGTGCTGGCGATCAGCGCCTTCGACTCCGAGGACGAGGCC ATACGCCTGGCCAACGACAGCCGCTACGGCCTCGCCGCCTCGCTGTGGAGCGACGACCTGCACCGTGCACACCGGGTGGCGCGGCGCTTGAATGCCGGAA CGGTGTCGGTGAATACCGTGGACGCGCTGGACGTCGCGGTGCCTTTCGGCGGCGGCAAGCAGTCCGGCTTCGGTCGCGACCTGTCGCTGCATTCCTTCGA CAAGTACACCCAGTTGAAGACGACCTGGTTCCAGTTGCGCTGAAGACGCGACGGACGCGACACGACTCGATGCCGATAACGACAACAAGAGGACGATCGA
|
|
| DNA Sequence for Gene |
>CR65_RS0105875
ATGAACGACACGCCGAACGTGCGTGAGCCGGCCCTGCGCCGCGTGCTCGGGCTGGGACCGCTGCTGGCGGTGGCCATCGGCCTGGTGGTTTCCCAGGGCG TGATGGTACTGATGCTGCAAGGCGCCGGGACGGCCGGCCTCGGCTTCATCGTGCCGCTGGGAGTGGCCTACCTGCTGGCGCTGAGCTACGCCTTTTCCTT TTCCGAGCTGGCCCTGATGATTCCCCGCGCCGGTAGCCTGAGCAGCTACACCGAGGTGGCCATCGGGCATTTCCCGGCGATCCTGGCGACCTTTTCCGGC TACGTGGTGGTGGCGATGTTCGCCCTCTCGGCGGAACTGCTGCTGCTCGACCTGATCATCGGCAAGGTCTACCCCGGCGCGCTGCCGCCGATGCTGGTGG CCTACGGCGTGCTCGGCCTGTTCACCCTGCTCAACCTGCTCGGCATCGACATCTTCGCGCGCCTGCAGAGCGCCCTGGCGCTGCTGATGATGATCGTCCT GCTGGTGCTCGGCCTGGGTGCGGTGAGCAGCGACCACGCTTCCGCGCAGACCGCCCTGGCGAGCGGCTGGAACCCGCTCGGGGTAAGCGCCCTGGCGCTC ACCGCGATGGCCGTGTGGGGCTTCGTCGGCGCCGAGTTCGTCTGCCCGCTGGTGGAGGAGACGCGGCGTCCGGAGCGCAACATCCCGCGTTCGATGATCC TCGGCCTGAGCATCATCTTCCTGACCATCGCCCTCTACTGCTTCGGTGCGCTGCTGTGCATCCCGCAGGCGGAACTGGCCGGCGACCCGCTGCCACACTT CCTCTTCGCCAACCGCGTGTTCGGCGAGTACGGCCAGCTGTTCCTGGTGATCGCCGCGATCACCGCCACCTGCAGCACCCTCAACTCGTCGCTGGCGGCG ATCCCGCGGATGCTCTACGGGATGGCGCAGAACGGCCAGGCCTTCCCGCAATTCAAGCAGCTCAGCCGGCGGGCGCGCACGCCCTGGGTGGCGGTGCTGT TCGTCGCCGCGATCACCGGCCTGCCGATCCTGATCCTCGGCCAGGACCCGGACTCGATCAACCTGCTGCTGCTCGCCGCCGCGCTGGCCTGGCTGCTGGC CTACATCATCGCCCACGTCGACGTGCTGGCCCTGCGCCGTCGCTATCCGCACATCGCCCGTCCGTTCCGCACGCCGTTCTACCCGCTGCCGCAACTGTTC GGCATCGCCGGGATGATCTACGCGGTGGTCCACGTCTCGCCGACCCCGGAAATGACCGGACGGATCTTCGCCAGCGCCGGCGTGGTGCTCGGCGTGGTCT CGCTGGTGGCGGTGGTGTGGATCAAGGGCGTGATGCGCAAGCCCCTCTTCGTACCCGAACCGCTCGAGACGGCCGGTGAGACTGCCCAGGGCAAGTCCGT CGCCCTCGATCCCCTGCAATCCCCTTCGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCGCCAAGGGAACAAGGAGAACACAGACGATGACCGCTCAGCTCAACCCGCAGCGCGACACCCGCGACTACCAGCAACTGGACGCCGCGCACCACATCC ACGCCTTCCTCGACCAGAAGGCGCTGAACCGCGAAGGCCCGCGGGTGATGGTCCGCGGCGATGGCCTGCAGCTCTGGGACAACGACGGCAAGCGCTACCT GGACGGCATGTCCGGCCTCTGGTGCACCAACCTCGGCTACGGCCGCCAGGACCTCGCCGCCGCCGCCAGCCGCCAGCTGGAACAACTGCCGTACTACAAC ATGTTCTTCCACACCACCCACCCGGCGGTGGTGGAGCTTTCCGAGATGCTCTTCAGCCTGCTGCCGGACCACTACAGCCACGCGATCTACACCAACTCCG GCTCCGAGGCCAACGAGGTGCTGATCCGTACCGTGCGGCGCTACTGGCAGATCCTCGGCAAGCCGCAGAAGAAGATCATGATCGGCCGCTGGAACGGCTA
|
|
| Amino Acid Sequence |
>putative amino acid permease
MNDTPNVREPALRRVLGLGPLLAVAIGLVVSQGVMVLMLQGAGTAGLGFIVPLGVAYLLALSYAFSFSELALMIPRAGSLSSYTEVAIGHFPAILATFSG YVVVAMFALSAELLLLDLIIGKVYPGALPPMLVAYGVLGLFTLLNLLGIDIFARLQSALALLMMIVLLVLGLGAVSSDHASAQTALASGWNPLGVSALAL TAMAVWGFVGAEFVCPLVEETRRPERNIPRSMILGLSIIFLTIALYCFGALLCIPQAELAGDPLPHFLFANRVFGEYGQLFLVIAAITATCSTLNSSLAA IPRMLYGMAQNGQAFPQFKQLSRRARTPWVAVLFVAAITGLPILILGQDPDSINLLLLAAALAWLLAYIIAHVDVLALRRRYPHIARPFRTPFYPLPQLF GIAGMIYAVVHVSPTPEMTGRIFASAGVVLGVVSLVAVVWIKGVMRKPLFVPEPLETAGETAQGKSVALDPLQSPSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|