Pseudomonas aeruginosa PA21_ST175, H123_07932

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00056
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 128 293 1.02938E-29
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 132 259 1.4E-7
PANTHER PTHR43003 DNA-3-METHYLADENINE GLYCOSYLASE - - 79 291 4.2E-45
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 117 293 9.77E-46
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 245 296 4.1E-11
SMART SM00478 endo3end IPR003265 HhH-GPD domain 136 294 4.9E-15
FunFam G3DSA:1.10.340.30:FF:000008 DNA-3-methyladenine glycosylase 2 - - 127 243 2.2E-46
Gene3D G3DSA:3.30.310.20 - IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily 9 126 5.3E-30
Pfam PF06029 AlkA N-terminal domain IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 10 126 5.3E-32
SUPERFAMILY SSF55945 TATA-box binding protein-like - - 9 107 1.88E-27
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 128 243 3.8E-33
SMART SM01009 AlkA_N_2 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 9 126 8.4E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.