Pseudomonas sp. GM25, PMI24_05806
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM25 PMI24_contig_179.179, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCGATTTCGGTCGGCGTGGTGGATGTCGAGACCCAGAGCAAGGCGTTGTCGCTGCGGGTGCTGACGGTCGATGACTCGTCGGTGGCGCGCAAGCAGG TGACGCGTTGCCTGCAGACGGTCGGTGTCGAAGTGGTGGCGTTGAACGACGGCAAGCAGGCGCTGGATTACCTGCGCAAGCTGGTCGACGAGGGCAAGAA GCCGGAAGAAGAGTTCCTGATGATGATCTCCGACATCGAAATGCCGGAGATGGACGGGTACACCCTGACGGCCGAGATCCGCAGCGACCCTCGCATGCAA AAGCTTCATATCATCCTGCATACTTCGTTGTCGGGTGTGTTCAATCAGGCGATGGTCAAGAAAGTCGGTGCCGATGACTTCCTGGCCAAGTTCCGTCCTG ATGACCTGGCATCCCGGGTAGTCGACCGGATCAAAGCAGCAGATATCAGCTAAGGGCCTTCTGCCCCTGGCGTTCAACACGATTTAAGAGGCGGCATCAT
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| DNA Sequence for Gene |
>PMI24_05806
TTGTCTACGGGTAATTTGGATTTCGAACAGTTCCGGGTCTTCCTGGAAAAAGCCTGTGGCATTTTGCTCGGTGAAAACAAGCAGTACCTGGTGTCGAGCC GTCTCAACAAACTGATGGAGCAGCAAGGCATCAAGTCCCTGGGTGAGCTGGTACAGCGCATCCAGACCCAGCCGCGCAGCGGTTTGCGCGAGCAGGTGGT CGATGCCATGACGACCAACGAAACCCTGTGGTTTCGTGACACCTATCCGTTTGAAGTCTTGAAGAACAAGGTGCTGCCCGAGGCGATCAAGGCCGCTCCC AACCAGCGTCTGCGGATCTGGTCGGCGGCCTGCTCGTCGGGTCAGGAACCCTATTCGCTGTCGATGTCGATCGACGAGTTCGAGCGGACCAACATCGGCC AGTTGAAGATGGGCGTGCAGATCGTTGCCACGGATCTGTCCGGCAGCATGCTGACCAACTGCAAGACCGGCGAGTACGACAGCCTGGCGATCGGTCGCGG TCTGTCCGCCGATCGTCTGCAGCGCTACTTCGACCCGAAAGGGCCGGGACGCTGGGTGATCAAGGCGCCGATCAAGAACCGGGTGGAATTCCGCTCGTTC AACCTGCTCGACAGCTACGCAAGCCTGGGCAAGTTCGACATCGTGTTCTGCCGCAACGTGCTGATCTACTTCTCCGCCGAGGTGAAGAAGGACATCCTGT TGCGCATCCACAGCACGCTGAAACCGGGCGGTTATCTGTTCCTTGGCGCTTCCGAGGCGCTGAACGGTCTGCCGGATCATTACCAGATGGTTCAGTGCAG CCCGGGGATCATCTACCAGGCGAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAAGACCGGCAACACAAGAAACGGGAGTCCTCAGGGGCTCCCGTTTTTTTATGCCTGAAGGTTTTGCCGGTGGCAGGTGGCGGCAGAAAAGCGGCATCC GGCGGAAACCGGTTGCCGCTTTTCTGGCATTGCCGCGTTGCCGGTTCGGCGCAAAGCCCCGTAATCCGGGGCTTTCTCAAACTGGCACGCCGCTTGCTAT AACCCTGTTACGAAAAATCCGGTCACCTGAAGGTTCCCGACATGAGCATCAGCTTCGATAAAGCGCTCGGCATTCACGAAAAGGCTCTGGGCTTCCGCGC CCAGCGTGCCGAAGTGCTGGCCAACAACATCGCCAACGCCGACACCCCGAACTACAAGGCGCGGGATCTGGAGTTCTCCAAAGTGCTCGAAGCACAGAGC CAGAAGAACGCCAACGGCACCATCGCCCTGAACATGACCAACAGCCGTCACATCGAAGCTGAAGGCCTGGGCAATGGCGACGAGTCGCTGATGTATCGCA
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| Amino Acid Sequence |
>chemotaxis protein CheR
MSTGNLDFEQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQGIKSLGELVQRIQTQPRSGLREQVVDAMTTNETLWFRDTYPFEVLKNKVLPEAIKAAP NQRLRIWSAACSSGQEPYSLSMSIDEFERTNIGQLKMGVQIVATDLSGSMLTNCKTGEYDSLAIGRGLSADRLQRYFDPKGPGRWVIKAPIKNRVEFRSF NLLDSYASLGKFDIVFCRNVLIYFSAEVKKDILLRIHSTLKPGGYLFLGASEALNGLPDHYQMVQCSPGIIYQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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