Pseudomonas sp. GM25, PMI24_05474

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM25 PMI24_contig_170.170, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGCGGTGGTCAGCTCGCCGTTGGCTTGCAGGGTGCTGAGCAGGCCGGTCTGCGGGAACTGGCGCATTTTCAGCAGGTATTCGATAGCCGGGCCTTCGCC GCCCAGTTGCGGGGCTTCGGCGCTGCCGGTCACTGGAATCACTTCCAGATACAAATCTTCGGTCAGGCGCTGGTTCAGACGCAGCTCTTCGCCGCAGAAG TGTTCACGGGAATCGAGGGCGGTAAAATCAAGGAAGCCGAAATTCACCGGCTTCTTCACTTTATAGGCGTAGGGGCCGGTGAGCAGTACCCACGAGATAT GGGTTTCGATGACCTGAAACCCTTCGACGGGGTGCGGGTAGAGGGCCGGGTTTTGCAGGGCAGCGATCAGGGACTGGCTCACGGACGATCCTTCAGAGAC TGGGGGAAATTCAAGGCGCTCATTATGGCCGCTCGCCAGCCCGACGCAAACCTCGGAGCGCTCCTGTTGAGTATGAATAAAGTGCGTATAATCCGCCGCC
DNA Sequence for Gene
>PMI24_05474
ATGACTCGTACTCGATCCCCCCGTACCCCTAAAAAACCAGCTTCCCGGGGCCTGCGCCCATGGTTGGGCTGGGCCCTTAAACTCAGTCTGGTCGGCCTTG TGGTGCTGGCCGGCTTCGCCGTTTACCTCGATGCCGTGGTGCAGGAGAAGTTCTCCGGCAAGCGCTGGACCATCCCGGCCAAGGTGTACGCGCGTCCGCT CGAGCTGTTCGTCGGACAGAAGCTGAGCAAGGACGATTTCCTCACCGAACTCGATGCCCTGGGCTATCGTCGCGAAGCCGTGAGCAACGGTCCCGGCGCG GCGGCGGTCAATGGCAATACGGTTGATCTGAATACCCGTGGCTTCCAGTTCTACGAAGGCCTCGAGAAACCGCAGCCGGTGCGCGTGCGTTTCTCCGGCG ATTACGTGGCCGAACTCTCGGCGACCAACGGTTCGAAGCTCTCCGTGGTACGCCTGGAGCCGCTGATGATCGGCGGTATCTACCCGAAAAACCTTGAAGA CCGGATTCTGATCAAGCTCGATCAGGTGCCGCCGTATCTGCTGGAAACCCTGGTCGCCGTGGAAGACCGGGATTTCTACAGCCACTGGGGCGTGTCGCCG AAATCGATTGCCCGCGCCGTTTGGGTCAACACCTCGGGTGGCAAGATGACTCAGGGCGGCAGTACGCTGACCCAGCAACTGGTCAAGAACTTCTACCTCA CCAACGAACGCAGCCTGACCCGCAAGCTCACCGAAGCGATGATGGCGATGCTGCTTGAGCTGCATTACGACAAAAAGGAAATCCTTGAGGCTTACCTCAA CGAAGTCTTTGTCGGTCAGGACGGCCAGCGTGCGGTGCACGGTTTCGGTCTGGCCAGCCAGTTCTTCTTCGCCCAGCCCTTGTCCGAGTTGAAACTGCAT CAGGTCGCGCTTTTGGTCGGCATGGTCAAAGGCCCGTCCTATTACAACCCACGTCGCAACCCGGAGCGGGCGCTGGAACGACGCAATCTGGTGCTCGACG TGCTTGAGCAGCAGGGCGTCGCTTCCGCCGAACAGGTAGCCGCTGCGAAGAAAATGCCGTTGGGCGTGACCACGCGCGGCAAGCTGGCCGACAGTTCGTT CCCGGGCTTCATCGATCTGGTCAAACGCCAGTTGCGTGAAGACTACCGCGACGAAGACTTGACCGAAGAGGGCCTGCGGATCTTCACCAGTTTCGATCCG ATCCTGCAGATGAAAGCCGAAGCGTCGGTCAACGACACCTTCAAGCGCCTGTCCGGTCGCAAGGGTTCCGACGACGTGGAAGCGGCGATGGTCGTGACCA ACCCGGAAACCGGTGAAGTCCAGGCAATGATCGGCAGCCGTCAGGCGAGTTTTGCCGGCTTCAACCGCGCATTGGATGCCGTGCGGCCGATCGGCTCGCT GATCAAGCCGGCGGTTTATCTGACGGCGCTGGAGAAACCGAGCCAGTACACGCTGACCAGTTGGCTGTCGGACGACCCGCTTTCGATCAAAGGCGCGGAC GGTCAGGTCTGGAAACCGCAGAACTATGACCGTCGCTCCCACGGTACGGTGTTCCTGTATCAAGGGTTGGCACATTCCTACAACCTCTCGACCTCGCGTC TCGGTCTGGCGGTCGGTGTTCCGAATGTCCTCAAGACGCTCGCGCGACTGGGCGTAACTCGCGAGTTTCCGGCGTTTCCTTCGATGTTGCTCGGCGCTGG CGGCATGACCCCGATCGAAGTCGCGACCATGTACCAGACCCTGGCCAACGGCGGTTTCAACACGCCGATGCGCGGGATCCGCAGCGTGCTGACTGCCGAT GGCGAGCCGCTCAAACGTTATCCGTTCCAGATCGAGCAACGGTTCGATCCGGCCTCGATCTACCTGATCCAGAACGCCATGCAGCGGGTCATGCGTGAAG GTACTGGCAGTTCGGTTTATAACGTGTTGCCAAGAACCCTGACACTGGCGGGCAAGACCGGTACCAGTAACGATTCGCGCGACAGCTGGTTTGCCGGTTT CAGTCAGGATCTGCTGGCGGTGGTCTGGCTCGGTCGTGACGACAACGGCAAGACGCCGTTCACCGGGGCCACCGGTGCGTTGCAGGTCTGGACCAGTTTC ATGCGCAAAGCCGATCCGCTGCCGCTGGACATGCCGCAGCCGGATAACGTGGTGCAGGCCTGGGTTGATTCGCGTACCGGCCAGGGCTCCGATGCCAACT GTCCGGGCGCCGTGCAGATGCCGTATATTCGCGGCAGCGAACCGCCACCCGGCGCCTCCTGCGCGGGCGAAAGCCCGGCATCGGGCGAGTCGGTGATGGA TTGGGTCAAGGGCTGGATGAATTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAAGAGGGTTTCAAGTGAACAAGTGGTTGATTCCAGCGGTGACCGCCGTGGCTTTGCTCAGCGGCTGCTCCACCGTACAGCGTGGTTCGATTCCGGTT GTGGACTCCGGCACTGCCGTATCCAACAGCGAGCGCATTTCGGCCAATGGCGGTTTCCGTCAAACGACGGTGAAACGTCCTGCACAGGCCCAGACCCAGG CGATCCCGCAAGGTGATACCGGTGTGGTAGTGATGGTGCCGGGCGGCGCAGCGGCTTCGGCACCGATCAGCTCTTCGCCGATCGTTCCGGGCCCGGCGTC CGGCGGCATCACGCCGGGGCCGTACAACCCTTCGGCGGTCGAGTCGGCGCCGATCAGCTCCGGCAGCTACAGCATGCCTTCGACGCCCAGCGGCATTCCT TCGGCCAGCAGTGGCGGCGGTCTGTCTGCCGATGAGCAACTGGACGGCCCGGTTCTCGCACTGTTGAGTACAGCGCAACAGCAGCAGGCCGGTGGCGACC
Amino Acid Sequence
>penicillin-binding protein 1B
MTRTRSPRTPKKPASRGLRPWLGWALKLSLVGLVVLAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFVGQKLSKDDFLTELDALGYRREAVSNGPGA AAVNGNTVDLNTRGFQFYEGLEKPQPVRVRFSGDYVAELSATNGSKLSVVRLEPLMIGGIYPKNLEDRILIKLDQVPPYLLETLVAVEDRDFYSHWGVSP KSIARAVWVNTSGGKMTQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAMLLELHYDKKEILEAYLNEVFVGQDGQRAVHGFGLASQFFFAQPLSELKLH QVALLVGMVKGPSYYNPRRNPERALERRNLVLDVLEQQGVASAEQVAAAKKMPLGVTTRGKLADSSFPGFIDLVKRQLREDYRDEDLTEEGLRIFTSFDP ILQMKAEASVNDTFKRLSGRKGSDDVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLIKPAVYLTALEKPSQYTLTSWLSDDPLSIKGAD GQVWKPQNYDRRSHGTVFLYQGLAHSYNLSTSRLGLAVGVPNVLKTLARLGVTREFPAFPSMLLGAGGMTPIEVATMYQTLANGGFNTPMRGIRSVLTAD GEPLKRYPFQIEQRFDPASIYLIQNAMQRVMREGTGSSVYNVLPRTLTLAGKTGTSNDSRDSWFAGFSQDLLAVVWLGRDDNGKTPFTGATGALQVWTSF MRKADPLPLDMPQPDNVVQAWVDSRTGQGSDANCPGAVQMPYIRGSEPPPGASCAGESPASGESVMDWVKGWMN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site