Pseudomonas sp. GM25, PMI24_05041
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM25 PMI24_contig_129.129, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGTGCACCAATCGGCATCTGGCCCAGAGCCTGCCCGCCGGTACGCCGCTGGGTTTCGAACGGCCGGGGCCGGTGGCGTGGGCACGCCTGCGCAATCCGC CGAGCCCGCAAAGCCTGCCGCGTCTGGACGGCGATTCGCGCTGGCGACTGGTCTCGCAACTGACCCTCAATCATCTGTCGCTGGTCGAAGGGCCGCAGGC GCTGGATGCGCTGAAGGAAATCCTGACCCTGCACAACCTGCGCGAAGAGGCCAGCGCCCTGCGTCAGATCGAAGGTCTGCTGAGCCTCGATTGTGAACGA GTGATCGGCCATGTCGGCGCCGACGCCTGGCGTGGTTGGCGCAATGGGCTTGAAGTGCAATTGCAGCTCGATCCACAGCATTTCGTCGGCAGCAGCGCGG TGTTGTTTTCAGCGGTACTCGCGCAGTTCTTTTCGGTGTACGCCACGGCCAATCGCTTCGTGCGCACGGTACTCATGCAGGCAGACAAGGAGGTCAAGGC
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| DNA Sequence for Gene |
>PMI24_05041
ATGGCAACCCCAAGCCGGCATGCCCCTGTCGCTCTGACCCTGAGCCAGCGCCTGCGCCGTGATCCGCAGGCGTTCGAATGGTTGCAGGCGTTGCTGTTGC TGGAGCGCGAACAGCCGCAGGCCGACGCCCTTGGTTCGGGTACATCGCCACAGGCCGAAGCGCTGAAGTTGCGCGGGCCGCTGACGCCATTGTTCGCCGC CAGCCAGATCGAAAGCCTGGAGGAAAACCCCGGTGAACCGCTGACCCTGAACTCGCCGATGTTCGGCCTCGGCGGCCCCGACGGCCCGTTGCCTTACGCC TATCAGGAATGGCTGCAACAACGGGCACGGGCCAAGGATCATGCGCCCGCCGAGTTCCTCGACCTGTTCCAGCATCGGCTGTTGAGCCTGCTGTACAAGG TGATGCGCAAACACCGGATCGCCCTCGGTTTCATTACGCCCGGCGCCTCTCCGGTGCAGGCGCAACTGCGGGCGCTGACCGGTTTGCTGCCAAAATCCTT GCAGGAACGCCAGGCAATTCCCGACTGCGCCGTTCTGGCCTGCACGGCGTTGTACGCCGATGGCCGCCGGTCATTGGCGGGGTTCGCGGCGATTGTCCGT GAGCAGTTTTCCGTGGCAGTGGAACTGAGCGCTTATGAAGGGGCGTGGCGTGAAATCCCACGCGCCAGCCGCAGCGTCATGAAGGCCGGCGGACGCAATC TGCAACTGGGCCGCAGCGCTGTCGCCGGGACTCGGGTCTGGGATGAACATGCCGGGATTCGCCTGACGCTGGGGCCGCTGCCATCGACGCAGGCCGCGCG CTTTTTGCCTGACGGTGAGGCGCATCCGGCACTGGCGAGCCTCGCTGCGCTGTATTTCGGCCCGGATCTGGACGTGAAACTGGTGCTGCTGGTGCGCGGT GCCGGGCCACTGCAACTCGGCCGACAAACCCCGGCCCTGTTGAGCTGGAACGGTGGCCTGCAACGTCAGACCAGCCTGGCCGTGCAACGGATCGAAACCC GCCTGCGTCAGCTGGAGATCACCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCCTCGAACGCGCTGCCCAGCGGTGCTTGCAGCGCGGGCATCACTTTGTC GAGATCGAGCATTTGTTGCTGGAACTGCTGGATATCGAGGGCGGCGATTTTGCCTTTCTGTTGCCGCGTTTTGGATTGGAACGGGATGCGCTGACGGCGG AGATCAACAAGGCGCTGGACCTGTTCAAGGCTGGCAGCACGCGCACGCCTGCGCTGTCTTCGCACACGCTCGGATTGCTGGAAGACGCGGTGGTGCAGGC CAGTGTGCTGGGGATCGACAGCATTCGTTCCGGGCTGCTTTTATTGGCGTTGATCGACCGTGACGAGCGCCGCAGCCTGCTGCTCAACAGTGCATCGTCA TTGCTGCGAATTCCGAAAGAAGCGCTGCGAGCAAACCTGCTGGAGTGGACGGAAAACTCCCGCGAGCATGTCGGCCCGCGTTCCGTGTCTTCGGGGAGTC
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| Amino Acid Sequence |
>type VI secretion protein
MATPSRHAPVALTLSQRLRRDPQAFEWLQALLLLEREQPQADALGSGTSPQAEALKLRGPLTPLFAASQIESLEENPGEPLTLNSPMFGLGGPDGPLPYA YQEWLQQRARAKDHAPAEFLDLFQHRLLSLLYKVMRKHRIALGFITPGASPVQAQLRALTGLLPKSLQERQAIPDCAVLACTALYADGRRSLAGFAAIVR EQFSVAVELSAYEGAWREIPRASRSVMKAGGRNLQLGRSAVAGTRVWDEHAGIRLTLGPLPSTQAARFLPDGEAHPALASLAALYFGPDLDVKLVLLVRG AGPLQLGRQTPALLSWNGGLQRQTSLAVQRIETRLRQLEIT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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