Pseudomonas sp. GM25, PMI24_04013
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM25 PMI24_contig_74.74, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCCCTCGGCACGCGATTCAGCGTGCGTCATGACGATCAGCAAACCGTGCTCAACGTGTTCCAAGGCGCGGTGGAAGTGCGCAACCACAACGATCAGAT CGAAGTGGTGCAGGCGGGTCGGCAACTGGCGTTCAGCGCTCAGCAACTGCACGCCACAACTCCGGCCAATCCATCCCGCGAAGCCTGGCGTCAGGGCTTG CTGCTGGCGGACAACCTGCCGCTGGGCGATTTGATCGAAGAACTCAGCCGCTATCGACCGGGGCATCTGCATTGCGATCCGGCCGTTGCGCGGTTGCCGG TGATGGGTTCGTTCCCGCTCAAGGACACCGATCAGGCGCTGCGATTGCTCGAGGCGGCGTTGCCGATCCGGGTCGACAAGACATTGAGCTGGTGGGTAAA CGTCGGGCCCAGAGGCTGATTATTTTTCATTTCACGGTTCCCTTTTGATCGTCTCGTCCGGTTGATCCTCAGTAGCCCCTCTTCTGCCTTCGGGAACTCC
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| DNA Sequence for Gene |
>PMI24_04013
ATGCTGCGCTCCACGTTTGCCCGCACCCGTTTCACCCTGGCCCTGGCGTGCGCCATGCCGGGGCTGTGCGCGCCGAATGCCGTGGCCGAAGCCCTGCGCG CAGCAACCCATCGCTACCACATCGCCCCCGGCCCGTTGGTCAGCGTCCTCAACCGTTTTGCCGAACAAAGCGGCGTGTTCCTCGCCGGCCACAACGACCT CGCCGCCGACAAGCGCAGCCCAGGCCTGACCGGCGACTTCACCGAACAACAAGCCCTGCAACGCCTGTTGCAAGGCAGCGGCCTGCAAGCCCAGGCGCAG AGCGCGGGCGGTTACGTGTTGCGGGCCGCGCCAGCCGGGCAAAACCCGCTGGAGCTGGACGCCACCACCGTCTCCGGCCGACAGCTCGGCGCCATTACCG AGGGCACCGGCGCCTACACCACCGGCTCGACCGCATCGGCCACCGGCCTGCCCTTGTCCCTGCGCGAAACCCCGCAGTCGGTCACCGTCATCACCCGCCA GCAACTCGACGATCAGGGCGCCACCGGCATCGCCGACATCCTGCGCCGCGCGCCCGGCATCAGCGTGCAGAACTACGACAGCGAGCGCTGGGAGTTCTCC GCCCGAGGCGCGCCGATCACCAACTTCCAGTACGACGGGGTCAACACCGACTACGACGGTGTTTACGATTACGGCACCACCAGCACCGACATGGCGCCTT ACGACCGGGTCGAAATCATCAAGGGCGCCACCGGGTTGATGACCGGATCCGGCGACCCTTCGGCCACGGTCAACCTGATCCGCAAACGTCCGACCCCGGC ATTCAAGGCCTCGCTCAGCGGCACCGTCGGCTCATGGGACAACTACCGCAGCGAAGCCGATATCGCCGGGCCGCTGACCGACAGCGGCAACCTGCGCGGG CGCTTCGTCGGCGTCCATCAACAGCGCAGCGCCCATGCCGACCACTACCAAAACACCCGGGACATCGCCTACGGCATCCTCGAAGCCGACCTCAATCCGG ACACCCTGCTGACCGTCGGTTTCGATCAGCAGAACACCCGCTCGCGCGGCGCCAGCTGGACCGGTTTCCCGATGTTCTACAGCGACGGTTCACGCTCCAA TTTCTCGCGCTCGTTCAACCCGGCCACCGACTGGAGCCGCCGCGATTTCACCAACCAGACGCTGTTCGCTTCCCTCAACCGGCAACTCGCCAATGACTGG ACGCTGAAGTTCAGCTACGACCGCAAACACCGCCAGCACGACACCCTGCTCGGCTCCGCCAGCGGCGGCAATCCCGACCCGGTCAGCGGCGACGGCATGT TCCTGTACATGGGCAAATTCAAGGGCGACGAAGTTCAGGACAACATCGACCTCAACCTCAGCGGCCCCTTCAGCCTGCTCGGCCGCGAGCACCAGTTGAT CGCCGGTTTCATGTCGATGAACACCCGCCAGGACATCCCGGTCTACGGCTCGGTCTACCCGGCGCTGAACGGCAGCATCTTCGACTGGCGCGGCGAGTTT CCCAAACCGGACATACCCCAGGTCGGGCGTGACCACATCGAACAACGCCAGACCGGCGCCTACCTCGCCACCCGCCTCAAACCCACCGACAATCTGGCGC TGATCCTCGGCGGCCGGGTCAGCGATTTCACCGCCCGCGACCACCTCGATTACAGCGACCCGAACACCCCGGACGTGCGCGACGGTTATCGCCAGACCGG CGTCGTCACACCCTACGCCGGCGTGGTCTACGACCTCGACGAAACCTGGTCTTTGTATTCCAGCTACACCCGCATCTATCAGCCGCAAACCAGCAAGGAC GCCTCGCGCCACGTGCTCGACCCGGTGCAGGGCAACAGCCTGGAAGCGGGAGTGAAAGCCGGGTTCTTCGACGGTCGGCTCAACGCCAGTTTTGCGGTGT TCCGCATCGAGCAGGACAACATCGCCGAATACGTCAGCGGTTTCGACAGCCAGTCCGTCTACCGCGCCGTGCAGGGTGCAACCACCAAAGGCTTCGAATT CGAACTGGCCGGCGAGCTGCGCGAAGGCTGGAACCTCTCCGCGGGCTACGCCTTCAACCACACCCGCGACGCCAACGGCGACCCGGTCTACGGCGCGATC CTGCAGACCACCGCGCCCGAGCAGATCGTGCGGGTGTTCAGCAGCTATCGCCTGCCGGGCATCCTGCAAAACCTCACCGTGGGCGGCGGCGTGAGCTGGC AAAGCGAATTCTTCGGCAACGTGTTCCAGCCCGACCCCGCCGGCAGCGGCCAGAACGTGCGCATCACCCAGGACAGCTACTACCTGGTGGACGCCATGGC CCGCTACCGTTTCAACCAACACCTGAGCACCACGCTCAACATCAAGAACCTGCTCGACAAGACCTACTACACCGGCCTCGGCAACTTCGGCACCGGCTTC TATGGCGAACCGCGCAGCGTGCAGTTGAGCACACGCTGGGATTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATTCGCCAACTTGTCGATCTACGGCAGCACCGCTCGACTACAGACTGACTACGCTGTAATCCAGCGTGTCTAACCTGCCGAGGATGACTGCCATGCAAC GCTTTCAAAAGCTGACACCGTGCCTGTGGTTCGACGATCAGGCCGAAGCTGCAGCGAAGTTCTACTGCTCGATCTTCGATCACTCGAAAATCACCGCCCT GACCCACTACAGCAAGGTCGGCCAGGAATTCCACGGCCGCCCCGAGGGCTCGGTGATGACCGTCAGTTTCGAACTCGACGGCCACACCTTTACCGGACTC AATGGCGGGCCAGTGTTCAAGTTCAATGAGGCAATTTCGTTTCAGGTCAATTGCCAGAACCAGGAAGAAGTCGACCATTTCTGGGGCAACCTCAGCGCCG GCGGGCCGGTGGAGGCGCAGCAATGCGGCTGGCTCAAGGACAAGTTCGGCGTGTCGTGGCAGATCGTGCCGGTGGCGTTCATGCACATGATGACCGACCC
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| Amino Acid Sequence |
>TonB-denpendent receptor
MLRSTFARTRFTLALACAMPGLCAPNAVAEALRAATHRYHIAPGPLVSVLNRFAEQSGVFLAGHNDLAADKRSPGLTGDFTEQQALQRLLQGSGLQAQAQ SAGGYVLRAAPAGQNPLELDATTVSGRQLGAITEGTGAYTTGSTASATGLPLSLRETPQSVTVITRQQLDDQGATGIADILRRAPGISVQNYDSERWEFS ARGAPITNFQYDGVNTDYDGVYDYGTTSTDMAPYDRVEIIKGATGLMTGSGDPSATVNLIRKRPTPAFKASLSGTVGSWDNYRSEADIAGPLTDSGNLRG RFVGVHQQRSAHADHYQNTRDIAYGILEADLNPDTLLTVGFDQQNTRSRGASWTGFPMFYSDGSRSNFSRSFNPATDWSRRDFTNQTLFASLNRQLANDW TLKFSYDRKHRQHDTLLGSASGGNPDPVSGDGMFLYMGKFKGDEVQDNIDLNLSGPFSLLGREHQLIAGFMSMNTRQDIPVYGSVYPALNGSIFDWRGEF PKPDIPQVGRDHIEQRQTGAYLATRLKPTDNLALILGGRVSDFTARDHLDYSDPNTPDVRDGYRQTGVVTPYAGVVYDLDETWSLYSSYTRIYQPQTSKD ASRHVLDPVQGNSLEAGVKAGFFDGRLNASFAVFRIEQDNIAEYVSGFDSQSVYRAVQGATTKGFEFELAGELREGWNLSAGYAFNHTRDANGDPVYGAI LQTTAPEQIVRVFSSYRLPGILQNLTVGGGVSWQSEFFGNVFQPDPAGSGQNVRITQDSYYLVDAMARYRFNQHLSTTLNIKNLLDKTYYTGLGNFGTGF YGEPRSVQLSTRWDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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