Pseudomonas sp. GM25, PMI24_03174
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM25 PMI24_contig_65.65, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCCGACATTCAACTGCTCACCCTCGATGGCCGAGGAGGTCACGATGTTTTGCAGCAAAGCGTCCAGCTCTGTCTGCGCGCTCAGTGAATGGCTCACCG ATCCCGCCATGCCCATCAATTGACCTTGTGCCTGAACACACTCGCGCAACAACGGTGCCAGGCGTTCCGCCTGCCAGTTAAAGTCGGGCCAATCAGGCTG CTGCCAGATCCAGTGAGTCGTCATTGATTGCTGATCCTGAGTGCGTGAGCCGATTGGAAACGCTATTCGGCTCATTTCGTGAGCCGAATATGACGCCTAT TCGGCTCATCGTCCACTGGACGCCGTGATTCCCACCGCAAATCCACATGTATCCGATTGTTAAAAAACTGCCGAATCGCTAACCTTCGCGCCTTCTACGA CCCGACAGTCACGGGTCTTTCAGACGAAACGCAGTTTTCACCGCTGTGAAGTACCGAGGATCGGGTGCAAGGTTTCGTCAGGCATGGCAGGAGGCATCAC
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| DNA Sequence for Gene |
>PMI24_03174
ATGCGTTCACTTCTTTTGCTGCTGATCGGCCTGGCCTGCGTGCCGGCGCTGTCGGCTGCACCGAGTGCCGAGATGTCGGAGCCGGTGGGCGGCTGGCGCT ATCACGGGCTGCTCGACCGCACGGAAAACCCGCAAGTCGCCTATCCCACGCCGCCGATCGATCGCGGCATCCAGCGCAATCGCACGATGATCGAGGGCCA GCTCAAGGCCATCGGACATCTGCGTCCGCCCCACAGCCTGGCGGTGAATGGCAATCCACTGAATCTGTACACCGACGACCAGGGCCGTTTTGCCCGGCCG TATGCGTTTGGCGCCGGTTCCAACAGTGTCGAGGTGATCAGCGCCGACGGCCAGTCGCTCAAGCGCGTTCAATTCTACGAAGCCAACAATTTGCGCACGC CGGCGCGGATTCGCGTGGTGCTCGGTTGGGACGACCCTAAAGCCGAACTCGACCTGCACGTCATTACGCCTGACGGCCAGCACGCCTTCTGGGCGCGTCC GGCGATGAGCAACGGCGGCGGCCTCGATCCGGACGGCGTCGATGGCCCCGGCCCGGAAATGTTCACCATGACTGCGCCGCTGCACGGCACCTATCTGGTT TACGTCAACTATTGGGGCAACTTCGGTAACGGCGGCTATAACTTCGAGGAGACCAGCAACCAGAACGAGGTCATCACCTCGCAAATCACGCTGGTGCTCA ACGAAAACACCGTCGACGAAAAACGCGAAACGTTCATCGTGCCCCTGCGGGCCATCGGTGATCTGCTGCTGGTCAAGACTTTCAACTATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATCCCGCCACGGATGAACTCGGGTTCTGGAAAGATGAGCGATAACACTGCTACACCGGCCGCCGTAACACCTGCGGGCAAACCTTCCCGGCGCTGGCC GTTGCTGGCGGTCGGGCTGTGCCTGGTGGCCGGCGTGGCGGGCGGGCTCGGCTGGCTGATGCACAAACCGAAGGCGCCGCCGGCGGAATTGGCCAGCGAC AAGCTCGGCCTCAGCCGCCCGGACGCGCTGCTGGAAACCCGCTCCCTGAGCCAGTTGCCCAAGGACCTGCTGACGGTGCCGTTCCTCAAGGCCACGCTGA CCGAGGATTTCGTCTTCTATTACGAAACCCACGCCGACCGCCTCGGCTTGATCGGCAGTCTGCGGCGGATCATCTACGAGCATGACTTGAAGCTGCAGGA CAGCCTGATCGAGCAGCTCTTCGATCAACCGGCAGACGTGGCGTTGTGGCGTGGCGCCGATGGTCGGCTGAAGGATTTTCTGTTGGTGATGGATCGCGGC
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| Amino Acid Sequence |
>signal peptide protein
MRSLLLLLIGLACVPALSAAPSAEMSEPVGGWRYHGLLDRTENPQVAYPTPPIDRGIQRNRTMIEGQLKAIGHLRPPHSLAVNGNPLNLYTDDQGRFARP YAFGAGSNSVEVISADGQSLKRVQFYEANNLRTPARIRVVLGWDDPKAELDLHVITPDGQHAFWARPAMSNGGGLDPDGVDGPGPEMFTMTAPLHGTYLV YVNYWGNFGNGGYNFEETSNQNEVITSQITLVLNENTVDEKRETFIVPLRAIGDLLLVKTFNY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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