Pseudomonas sp. GM25, PMI24_02786
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM25 PMI24_contig_63.63, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTAGGAAAAGCGCGAAGTGCCGTCCGGCATCAGGCCCTTGCCCTGGGTGGCGCGAATGGCCTGACACAGGTTGGTCTTGCCCGACTTACAGAATTTGCA CTGACCACATTCCGGGGTGTACAGCGGAATCACGTGGTCGCCGACGGCCACCGAGGTCACGCCTTCGCCGATCGCTTCGACGATGGCGCCGCCTTCATGG CCGAGGATCGACGGGAAGATACCTTCCGGGTCAGCGCCGGACAGGGTGTAGGCGTCAGTGTGGCAAACCCCGGAAGCCACGACGCGCAGCAACACCTCAC CAGCCTTGGGCATGGCGACATCGACTTCTACGATTTCCAGCGGCTTCTTGGCCTCGAAGGCAACGGCGGCGCGCGACTTGATCATGCTGACTCTCCAGTG AATCCATTGAATAAAAACCAGACAGGGAGTGTAGTCCAGCGCTGCCTGATGAATAATCCGGACAAAAGCAAAACATTATTGCCATACAGGGATAATCCCG
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| DNA Sequence for Gene |
>PMI24_02786
ATGTCTGAAAACCGCTGGGAAGGTATCGACGAGTTCGTCGCCGTTGCCGAATGCAGCCAGTTCACTGCCGCTGCCGAACGTCTCGGCGTTTCTTCCTCGC ACATCAGTCGACAAATCGTACGTCTGGAAGAGCGTTTGCAAACGCGACTGCTGTATCGCAGCACCCGGCGCGTCACGCTTACCGAAGCCGGCCAGACCTT CCTGCAACATTGCCAGCGCCTCCAGGACGGTCGCGAAGAAGCGTTGCGCGCAGTCGGCGACCTGACCAGCGAACCCAAAGGCATGCTGCGCATGACCTGC GCCGTGGCGTATGGCGAACGCTTCATCGTGCCGCTGGTGACCCGGTTCATGGGGCATTACCCGCAACTGCGCATCGATATTGAACTGACTAACCGGCAAC TCGATCTTGTGCATGAAGGCCTGGACCTGGCGATCCGCCTCGGTCGTCTTCAGGACTCCCGGCTGGTGGCGACTCGCCTTGCACCGCGGCGCATGTATCT GTGTGCGTCGCCTTCCTACCTTGAACGGTACGGACGCCCACACAGTTTGTCGGAACTGGGACGGCACAATTGCCTGATCGGCAGCTCGGACATCTGGCAG CTTGAACAAAACGGGCGGGAATTTTCCCAGCGGGTGCAGGGAAACTGGCGCTGCAACAGTGGGCAAGCGGTGCTGGATGCGGCGCTACAAGGCGTCGGAC TGTGTCAGTTGCCGGACTATTACGTGCTGGAGCATCTGCACAGCGGTGCGTTGATTTCTTTGCTGGAGGCGCATCAACCGCCGAATACGGCGGTGTGGGC GCTATATCCGCAGCAACGGCACTTGTCGCCGAAGGTGCGCAAACTGGTGGATTTTCTCAAGGAAGGTTTGGCCGAGCGGCCGGAGTACCGGATTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGACGATTGGTCCAGCGCTGACGCAACCATTCGAGGTCTTCGGGGCGGGTCACTTTCAGGTTATCCGCACGGCCTTCGATCAGGCGCGGCGCCATGCCGG CCCACTCCATCGCCGAGGCTTCATCGGTGATTACTGCATCCGCCACCAGACTGTCGGCCAAAGCCCGATGCAGCGCACCGAGGCGGAACATCTGCGGCGT ATAGGCTTGCCAGATCACACTGCGATCGACGGTTTCCACCACCCGACCGTGCTTGTCGACCCGTTTCAAGGTGTCCTTCGCTGGCACGGCCAACAGGCCG CCGACCGGATCGTTCGCCAGCTCAGCGAGCAATTTGTCGAGATCGTCACGGCTCAGATTGGGCCGCGCCGCATCGTGCACCAGCACCCAGTCCTCGTCGT CGGCACCTTGGGCATGCAGATGAAGCAAGGCGTTGAGCACCGAGCCGGAACGTTCGGCACCACCGTCGACACGCTGAATTCGCGGATCGCTGGCGCTGGC
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MSENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQTFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTC AVAYGERFIVPLVTRFMGHYPQLRIDIELTNRQLDLVHEGLDLAIRLGRLQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLSELGRHNCLIGSSDIWQ LEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDYYVLEHLHSGALISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDFLKEGLAERPEYRI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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