Pseudomonas sp. GM25, PMI24_02553

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM25 PMI24_contig_61.61, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGCTGCGCCAGAGTATCGGCGGTCTGCAACAGAGCCTGCGCACCCGTTCGGAGCTGAAGAACGAGCTGCGTCTGGCCCAGACCACCGTGCAAGGCACCA ACAAGAATCCGCTGAAGTTCGCCGTCGACCCGAGCGAAGCGCTGGACATCCTGTTGCAGCCGAACAAGCCGGGCCACTTGCCGGCCGAGCAGGCGATCTC CCGTGCGTTCCGCGACTTGCAGGCGCATCAGGTGGCGCTGCTGACCGCCAGCCGCGCGGCGGTGCGCGGCACTCTGGAGCACTTCTCGCCGGAGCAGCTG ACCCTGCGTTTCGAGCGCGACAACAAGCCGTTGCTCGCCACTGCTGGCGGGCGCTGGAGAGCGTTCAACCGTTACCACCATGCGCTGCGTCAGGACGACG ACTGGAGCGAGCGCCTGCTGGCCCGCGACTTCGCCCAGGCCTACGAAGAACAGATCCGCCTGATCTCCACCCTCCACACCGACCACCAAGGATGATGCGC
DNA Sequence for Gene
>PMI24_02553
ATGTCTCGCCGCTCGACCGCTTTTTTCAAGACGCTGACCGCGCTCACCCTGATGGTGCTGCTCGCTGGTTGCTCGTCGCTGTCGCCGTATTCGAAAGTGA CCAAGATCAACCTGAAGCTGACCGGCAGCGATCAGTTGAACCCGGACCTCAACGGTCGTCCGTCGCCGATCGTGGTGCGCCTGTTCGAACTCAAACACCC GGTGACCTTCGAGAATGCTGATTTCTTCAGTCTCTACGAACGCGCCAAGGAATCCCTCAACCCGGATCTGGTGGCCAGCGAAGAACTAGAACTGCGCCCG GGTGAAACCGTGGAGCTGAAACTCAGCGTGGAGGAGGGCAGCCGCTTCATCGGCATCCTCGCCGCGTACCGCGACCTGCCGGAAACCAAGTGGCGCCACA CATTCCCGATCACGCCGCTGGAAGTCACCGAAGCTGATCTGACCCTGGATCAGGCCGGTATCCGCAAGACCAACGAAGTGCTCGCCAAGGCGGATGACTG A
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCATGAATACCCATAAAGTCATCTGGCAGGAAGGCATGCTGCTGCGTCCGCAGCACTTCCAGCACAACGACCGCTACTACGATCACCAGATGAAGACCCG CACCCAGTTGCTGGGCGGTTACACCTGGGGTTTCCTGAACCTTGAGATCGACTTGCAGTTCCTCAACATGGGCAAACTGGTGATCAGTGAAGCCTCGGGG ATCCTGCCGGACGGCAGCCTGTTCGAACTCGGCGGCAACACCGAACCGCTGGCGCTGGACGTGCCGCCGAACACCGGCAACATGCCGATCTACCTGGCGC TGCCGCTGGTCACCGGTAACCACATCGAGGCCCGTCGCCCGGAGCAGTCCGACGTGCTGGCGCGCTACACCGCCTATGAAACTGAAGTGGCCGACTCCAA CGCCGGTGACGATTCGGCCAGCCAGGTCAGCTGCGGTCGGCCGGACTTCAAGCTGTTGCTCGGCGAGCAGCAGAGTGACCAGGCTTACGTGAAGCTGAAG
Amino Acid Sequence
>type VI secretion protein
MSRRSTAFFKTLTALTLMVLLAGCSSLSPYSKVTKINLKLTGSDQLNPDLNGRPSPIVVRLFELKHPVTFENADFFSLYERAKESLNPDLVASEELELRP GETVELKLSVEEGSRFIGILAAYRDLPETKWRHTFPITPLEVTEADLTLDQAGIRKTNEVLAKADD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site