Pseudomonas aeruginosa PACS2, A0K_RS30105

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0070063 RNA polymerase binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5536
 ECO:0000249
sequence similarity evidence used in automatic assertion		 23416301
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00926
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PACS2 genes in this class
Transcriptional regulators Other PACS2 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger IPR000962 Zinc finger, DksA/TraR C4-type 91 126 4.7E-11
PANTHER PTHR33823 RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR DKSA-RELATED - - 15 130 4.7E-29
FunFam G3DSA:1.20.120.910:FF:000005 RNA polymerase-binding transcription factor DksA - - 1 134 1.0E-88
Gene3D G3DSA:1.20.120.910 - - - 1 134 6.6E-42
SUPERFAMILY SSF57716 Glucocorticoid receptor-like (DNA-binding domain) - - 93 131 2.71E-9
Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. IPR012784 RNA polymerase-binding transcription factor DksA 11 132 27.460869
Coils Coil Coil - - 71 91 -
SUPERFAMILY SSF109635 DnaK suppressor protein DksA, alpha-hairpin domain IPR037187 DksA, N-terminal domain superfamily 1 92 3.92E-24
NCBIfam TIGR02420 JCVI: RNA polymerase-binding protein DksA IPR012784 RNA polymerase-binding transcription factor DksA 15 123 1.5E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.