Pseudomonas sp. GM25, PMI24_00577
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 235 | 540 | 4.71E-75 |
| CDD | cd06225 | HAMP | - | - | 214 | 258 | 7.9582E-6 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 211 | 263 | 2.5E-6 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 324 | 506 | 1.3E-43 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 208 | 250 | 4.1E-6 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 278 | 539 | 3.3E-81 |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 30 | 538 | 4.6E-115 |
| FunFam | G3DSA:1.10.287.950:FF:000001 | Methyl-accepting chemotaxis sensory transducer | - | - | 211 | 540 | 9.9E-96 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 211 | 540 | 1.6E-75 |
| CDD | cd11386 | MCP_signal | - | - | 305 | 504 | 5.3792E-55 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.