Pseudomonas sp. GM25, PMI24_00407
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM25 PMI24_contig_11.11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGGTCACCGTTACGCAAGGAGTTGCTCATGAATAATATCAAGCGCATTCTGCTTTCCGTTCTGATTCTATTGGTTGTGTTGGCGATCCTTGCGTTCGT TCTCGAGAATCAGCAATCGGTCTCCCTGTTGTTTCTTGGTTGGGAGGGGCCGCAACTTCCGGTGTCGGTTATTACGGTTGGTGCATTGCTGGCGGGTATG CTGATCGGACCGGTTTTTGGCTGGTTCCTGGGACGTGCGTCCAGGGCTTCACGTAAGCGTCTTGTCTGATTGCGACATGGAACGAAAGGCGAACTAAAAC TTTAGCCACAGCTTGTCTATATCCATTAGTAAAACGTTCATTAAGCTGTAAAATGCTGCGCCTGTCCGATAGTGGCATATTCCCACGTCGGTGCAGACTG GCTCTGTCAGAAGCCCCGGCTGAATTGATGGCTTTTGCATTTATGGATTAGACAGTGCTCGGTTGGCAGCCCTGTCAGCAACTCAAGGGTATGGTTTCGC
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| DNA Sequence for Gene |
>PMI24_00407
GTGAAAATTCTAGTAACCGGCGGCGCCGGGTTTATCGGCTCAGCTGTTATCCGTCATATCATTTCCAACACTACCGACGCAGTGGTAAACGTCGACAAGC TGACGTATGCCGGTAACCTTGAGTCGTTGGCCGAAGTCAGCGGAAACTCGCGTTACACGTTCGAGCGCGTCGATATCTGCGATCGTGAGCAGATTGACCG TGTCCTGCGTGAGCACCAACCGGATGCGATCATGCATCTGGCCGCAGAGTCTCACGTCGATCGCTCCATCTCGGGTCCTTCCGAGTTCATTCAGACCAAT ATCATTGGTACTTACACGCTGTTGGAAGCGGCACGCCATTATTGGACTGCGCTGGATGATGCGCGCAAGGCCGCTTTCCGCTTTCACCATATCTCGACGG ACGAAGTTTACGGCGACCTCGAAGGTCCGGAAGATCTCTTCACTGAAACGACTCCCTATCAGCCAAGTTCGCCGTATTCGGCAAGCAAGGCCAGCTCCGA CCATCTGGTCCGTGCCTGGGCTCGTACTTATGGTTTGCCGACGCTTGTGACCAACTGCTCGAACAACTACGGTCCTTGCCACTTCCCTGAAAAGTTGATC CCGCTGATCATTCTCAATGCGCTGGAAGGCAAGCCGTTGCCGGTCTATGGCAAAGGGAACCAGGTCCGTGACTGGCTTTATGTCGAAGATCACGCGCGTG CGCTTTACAAGGTCGTGACCGAGGGCGTCATTGGCGAGACGTATAACATTGGCGGTCACAACGAAAAACAGAATATTGAAGTCGTGAACACCCTGTGTGC TCTTCTCGACGAATTGCGTCCCGACTCTGCGCATCGCCCGCATGCGAGCCTGATCACTTACGTTCAGGATCGCCCGGGTCATGATCAGCGTTATGCCATC GACGCCAGCAAGATCCAGCGCGAACTGGGCTGGACTCCGGAAGAAACCTTTGAAACCGGGATTCGCAAGACTGTCGAGTGGTACCTGAATAACACTGAAT GGGTCGCTCACGTCAAAAGCGGAAGCTACCAGCAGTGGATCGACCAGAACTACGCAGATCGCTCGAACCAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAATTCTCTTACTGGGTAAAAATGGTCAGGTGGGGTGGGAGCTGCAACGCTCCCTCTCGCCGCTTGGTGAGTTGGTCGCGCTGGATCGTCATGCTGTCGA TGGTCTGTGTGGTGACTTGTCGGATCTGGACACCTTGCGTGCGACAATCCGCACGCTCAAACCTGATGTCATTGTCAACGCAGCTGCCTACACCGCAGTC GACAAGGCCGAATCCGAAGTCGAGCTGGCTGATCGCGTCAACGGCCATGCCAGTCAAGTCATGGCTGAAGAGGCGGCTTTGCTGGGTGCCTGGCTGATTC ATTACTCAACCGATTACGTGTTCAGTGGTGAGGGTTCGGCGTCATGGCAGGAGACCGATGCGGTCGCACCGGTCAATCATTACGGTGCAAGCAAGCTCGC CGGTGAGCAGGCAATCGCTGCGTCGGGCTGCAAGCATCTGATCTTCCGAACCAGTTGGGTCTATGGTGCTCGCGGCAATAACTTCGCCAAGACCATGCTT
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| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MKILVTGGAGFIGSAVIRHIISNTTDAVVNVDKLTYAGNLESLAEVSGNSRYTFERVDICDREQIDRVLREHQPDAIMHLAAESHVDRSISGPSEFIQTN IIGTYTLLEAARHYWTALDDARKAAFRFHHISTDEVYGDLEGPEDLFTETTPYQPSSPYSASKASSDHLVRAWARTYGLPTLVTNCSNNYGPCHFPEKLI PLIILNALEGKPLPVYGKGNQVRDWLYVEDHARALYKVVTEGVIGETYNIGGHNEKQNIEVVNTLCALLDELRPDSAHRPHASLITYVQDRPGHDQRYAI DASKIQRELGWTPEETFETGIRKTVEWYLNNTEWVAHVKSGSYQQWIDQNYADRSNQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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