Pseudomonas sp. GM25, PMI24_00405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM25 PMI24_contig_11.11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGTCTATTCGCGTCTAGGCTTAGTCTGAAGATTGCAGTAGTCGGGCGGGCGCCTGGCATAAGGAAGTGAATGAGCAAGTTTATAGTGTTTATAGGTGTC TTGATGTTGGCGGGCTGCACAACGAGCGCCAAGACCCATGCGGTGCGTGGAGTCAGTGGTATCGAGGTTGACTGCTCCGGCTTGGGTTCGGGCTGGGAGA AGTGTCAGAAGCGTGCCGCCAAGGAATGCAAGGGGGCGGGGTATAAGGTGGTCACGCGATCTGATGACGCCCGGGATGAGGATGAGTTTCCCTTTGGCTT CAATCCGGCAGGCTACGTCACTCGAACCATGTTGGTGATTTGTCGGTGAGTGAGCGTTGGCGGGCTTGTGATCCGATGCCCTGAAAATGGGCGTTTCGGC GAGCGGAAAGATATGTCAAGCCCTGGGCTGTTCAAAATCTTCCGGGCGTGCTAAAACCTTTCAAGCGCTGATCTAGCTGCTTGAAAAAGAAGGGAAAAAT
|
|
| DNA Sequence for Gene |
>PMI24_00405
ATGACGAAGTCGGAGTTGATCGAACGAATTGTCACCCATCAGGGGCTGCTCTCATCCAAGGATGTGGAGTTGGCCATCAAGACCATGCTTGAGCAAATGT CCCAGTGTCTGGCCACGGGGGATCGTATCGAGATCCGTGGTTTTGGCAGCTTTTCCTTGCACTATCGTGCGCCGCGTGTCGGTCGCAATCCAAAGACCGG TCAGTCCGTCAGCCTTGACGGTAAATTCGTTCCGCATTTCAAGCCAGGCAAAGAGCTGCGCGATCGCGTGAATGAAGAAGAGGAGGAGGGGGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGTCACCGTTACGCAAGGAGTTGCTCATGAATAATATCAAGCGCATTCTGCTTTCCGTTCTGATTCTATTGGTTGTGTTGGCGATCCTTGCGTTCGTTC TCGAGAATCAGCAATCGGTCTCCCTGTTGTTTCTTGGTTGGGAGGGGCCGCAACTTCCGGTGTCGGTTATTACGGTTGGTGCATTGCTGGCGGGTATGCT GATCGGACCGGTTTTTGGCTGGTTCCTGGGACGTGCGTCCAGGGCTTCACGTAAGCGTCTTGTCTGATTGCGACATGGAACGAAAGGCGAACTAAAACTT TAGCCACAGCTTGTCTATATCCATTAGTAAAACGTTCATTAAGCTGTAAAATGCTGCGCCTGTCCGATAGTGGCATATTCCCACGTCGGTGCAGACTGGC TCTGTCAGAAGCCCCGGCTGAATTGATGGCTTTTGCATTTATGGATTAGACAGTGCTCGGTTGGCAGCCCTGTCAGCAACTCAAGGGTATGGTTTCGCGT
|
|
| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEEEGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|