Pseudomonas aeruginosa PACS2, A0K_RS29065

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PACS2 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. IPR003716 DNA-directed RNA polymerase, omega subunit 1 62 17.791557
NCBIfam TIGR00690 JCVI: DNA-directed RNA polymerase subunit omega IPR003716 DNA-directed RNA polymerase, omega subunit 1 59 2.8E-22
Gene3D G3DSA:3.90.940.10 - IPR036161 RPB6/omega subunit-like superfamily 2 86 1.2E-27
PANTHER PTHR34476 DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA IPR003716 DNA-directed RNA polymerase, omega subunit 1 87 5.3E-25
SMART SM01409 RNA_pol_Rpb6_2 IPR006110 RNA polymerase, subunit omega/Rpo6/RPB6 8 61 4.8E-17
SUPERFAMILY SSF63562 RPB6/omega subunit-like IPR036161 RPB6/omega subunit-like superfamily 1 77 2.79E-25
Pfam PF01192 RNA polymerase Rpb6 IPR006110 RNA polymerase, subunit omega/Rpo6/RPB6 8 59 3.0E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.