Pseudomonas aeruginosa NCAIM B.001380, K260_RS0104870
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa NCAIM B.001380 K260DRAFT_scf7180000000062_quiver.15_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGCGGGCTGACCGTGCTCGGCACCAGCGGCTACCTGGCGATGGTGATCCTCGGCTCCTACGTCGGCTACGTGGTCAGTGCCTTCCTCACCGACCTGAT CGGGCGCAAGAAGAACTTCGTCCTGTTCGCCGTCGGCTCCTTCACCGTGGTCCTGCTCTACACCCAGTTGCCGGTGAGCAACGGCGCCATGCTCTGGCTC GGCTTCCCGCTCGGCTTCTTCGCCTCGGGCATCTTCAGCGGCATGGGCTCGTTCCTCACCGAACTGTTCCCAACCCGCATCCGCGGCTCCGGCCAGGGCT TCTGCTACAACGCCGGGCGCGCCATCGCCGCGCTGTTCCCGATGCTGATCGGCATGCTCGGCCAGAAGCTCTCGCTGGGCCTGGGGATCGGCGCCTTCGC CGCGGTCTCCTACGGCGTGGTGATCCTCGCCGCCCTCAGCCTGCCGGAAACCCGCGGCAAGCAACTGGAACTCTGAGCCGTCGACCGAGGAAATCCCAGC
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| DNA Sequence for Gene |
>K260_RS0104870
ATGCATCCCACTCCCCGCCTGGCTGCCGCGCTGCTCGCCGGCAGCGGGCTGGGCTGGCCGCTGCTCGCCCAGGCCGACCTGGTCGAGGACAGCCACGCCA GCCTCGAACTGCGCAACTTCTACTTCAATCGCGACTTCCGCCAGAGCGGCGCGCGCGACAACGCCGACGAATGGGCGCAGGGCTTCCTCCTGCGCCTGGA GTCCGGCTTCAGCGAAGGCACCGTCGGCTTCGGCGTCGACGCCATCGGCCTGCTCGGCTTCAAGCTCGACTCCGGCAGCGGCAGCGGAGGAACCGGGCTG CTGCCGGCCGACGGCTCCGCCGGCGGCTCCCAGGATGACTACGCCAAGCTCGGCCTGACCGCCAAGGCGCGGGTCTCCAACAGCCTGCTCAAGGTCGGCG CGCTGCACTTCAAGAGCCCGCTGGTCTCGGCCAACGACACCCGCCTGCTGCCGGAACTGTTCCGTGGCGCGCTGCTCGACGTGCAGGAGATCGACGGCCT GACCCTACGCGGCGCGCACCTGGACCGCAACAAGCTGAACAGCTCCAGCGACTACCAGGTGTTCAGCGCCAACCGCATCGGCGGGCGCAGCGATGCCTTC GACTTCGCCGGCGGCGACTATCGCCTGACCCCGGCGCTGACCGCCAGCCTGCACCAGGGTCGGCTCAGGGACATCTACCGGCAGACCTTCGCCGGCCTGG TACACACCCTCGACCTCGGCGGACAGCGTTCGCTCAAGAGCGACCTGCGCTTCGCCCGGGCCAGCGAGGACGGCGGCTTCCGCGAACTGGACAACCGCGC CTTCGGCGCCCTCTTCAGCCTGCGCCTGGGCGCCCACGCGGTGGCCGCCGGCTACCAGCGGATCAGTGGCGACGATCCCTATCCCTACATCGCCGGCAGC GACCCGTACCTGGTCAACTTCATCCAGATCGGCGACTTCGGCAACGTCGACGAGCGTTCCTGGCAACTGCGCTACGACTACGATTTCGGCGCGCTCGGCC TGCCCGGCCTGAGCTTCATGAGCCGCTACGTCTCCGGCGACAACGTCGCCCGCGGCGCGGCCAACGACGGCAAGGAATGGGAACGCAACACCGACCTCGG CTACGTGGTGCAGAGCGGGCCGCTGAAGAACCTCGGGGTGAAATGGCGCAACGCCACGGTGCGTTCGAATTTCGCCAACGACCTCGACGAAAATCGCCTG ATCCTCAGCTACAGCCTGACGCTGTGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCCGGCGAGCAATGACCTGAAGGAACCTGCATGAACAACCTGTTGTTGAACTGCGATATCGGCGAGAGCTTCGGTGCCTGGCGCATGGGCCTGGACGC CGAGGTGATGCCGCTGATCGATTGCGCCAACATCGCCTGCGGCTTCCACGCCGGCGATCCCGGCACCATGCGCCGCACCGTGGCCCTGGCGGTGGAGCAT GGCGTGCGCATCGGCGCGCACCCCGGCTACCCCGACCTGGTCGGCTTCGGCCGGCGCTCGCTGGCCTGCTCGGCGCAGGAAGTGGAAGACCTGCTGCTCT ACCAGATCGGCGCCCTCGACGGACTCTGCCGCGCCCAGGGCACGCGGGTACGCTACGTCAAGCCGCATGGCGCGCTGTACCAGGACATGATGCGCGACCC GGCGATCCTCGCCGCCGTGCTGCGCGCACTGGCGGCCTACGACCGCACCCTGCCGCTGATGCTGATGAGCACCCGCGACAACACCGCGGCGCGCGCGCTG
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| Amino Acid Sequence |
>porin
MHPTPRLAAALLAGSGLGWPLLAQADLVEDSHASLELRNFYFNRDFRQSGARDNADEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDSGSGSGGTGL LPADGSAGGSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAF DFAGGDYRLTPALTASLHQGRLRDIYRQTFAGLVHTLDLGGQRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGS DPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRL ILSYSLTLW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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