Pseudomonas aeruginosa NCAIM B.001380, K260_RS0102035
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa NCAIM B.001380 K260DRAFT_scf7180000000064_quiver.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAGACCTCGATGCGGTGGAAGGGCTGCGCCGGCACTTCGTCGCGAGTGGCGTGGAAGTCGCCACCCAGGCCGAGGCCATCGCCCAGGTGCGCAGCCTC AGCCGCAACCTCGGCCTGGTGTTCTGGATCGTCGCCGCGCTGGCCATCGGCGGTGCCTTCGCCGCCATCGCCGCCAGCAGCCTGGCCGCCGTCGAACGCA AGCGCCGCGCCCTGGCGGTGCTGCGTCTGCTGGGCTTCCCGACCGCCGCGCTGGTCGGCTTCGTCATGCTCCTGGCGCTGTTCAGCGCCGTCTTCGGCCT GTTCCTCGCCGGGCTGCTGTACGCCGCCACGGCCGGCGCGCTGAACCACCTGTTCGACAACCAGAGCGGCGAGTTCGTCTGCCGCCTGCTACCCAGCCAC TACCTGACGGCGCTGCTCGCCACGCTGCTGTGCAGCGTCCTGGCCGCCGCCAGCGGCGGCTGGCGCGCGGCGCGGATCGAAGCCGCAGAGGGATTACGCG
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| DNA Sequence for Gene |
>K260_RS0102035
ATGTTTGAGAAAGCCATTCTTCCGCTCGCCCTCGGCGCCTGCCTGGCATTTGCCGCGCCGGCCTGGGCCGAAGGCGACTCGCCGGACAATCCCAAGCCGC TGGCCGACGACGTCGCCCTGCCGCTGCCGTGTGGCGGCGAGATGGTCTTCCGGCATGTCTACGTACTCGCCGAAGGCGCCCTCGACGATCGCGAGGTCAA CCTCGGCTACGCCTTCAACGAAGGCGAGGCGGGCTACCAGCAGTCGTTCATCTCCGGCTACCGGCGCGACTACGTGAACGGCCAGTTCAGCCTCGCCGAC CTGGCACCGGCCTGGCAGCAGAAGCTCTCCGCCAGCCTGCCGAAGCCTGCCGCCGGCACCCCGCTGAAGCCGATGCTGTACTTCATCGGCAAGTACGAGG TGACCGCCCGCCAGTACGCCGCGGTGATGAGCCAGGCGGCCGCGCTCTCCGGCCAGGGCGAGGCGCCGGCCTGCGACGTGCCGGACGGGATGGCCGCGCG GCTGCCCAAGGTCAACCTCTCGCGCTTCGACGCCGAACGCTTCGGCGCGGTGTACAGCGCCTGGCTGCTGAAGAACCACCCGGAACTGCTGCCGGTCAGC GGCCGCGGCAAGAATCCCGAGGACGGCGGCATCGGCTTCGTCCGCCTGCCCACCGAGGTCGAGTGGGAGTTCGCCGCGCGCGGCGGCCAGGCGGTAAGCC GCCAGGAACTGGAAGGCCGGCTGTTCCCGCGCAAGGTCGAGGGCAGCGACCAGGAAGGCCCGCTGGGCGACTGGGCGGTGTACAACCAGGTCGCCGGCGG CACCGGGCAGGCCGCGCGACTGTTGCCGGTAGGGATGAAGCGGCCGAACCCGCTGGGCCTGTTCGACGTGATCGGCAATGCCGCGGAGATGGTCCAGGAG TCCTTCCAACTGGTCCACGCCGGTCGCCGGCAGGGCACATATGGCGGTTTCGTGGTGAAGGGCGGGAACTATCTCGAAGGCGAGATGACTCTATTCACCG GGATGCGCCGCGAATACCCGCTGTTCGCCGCCGACGGCAGCGAACAGCGCAACGAGACCACCGGTTTCCGTGTCGCCATCGGCGCGCTGTCCGCGCCGCG CTCGCGCTATCCCGAGCTGTTCGCCCAGTGGCAGAAGGAAGGCCGACTAGCGGCATTGACCGATGCCATCGATGACGCTCAAGATCCCACCAAGCAATTG GACGGAATCATTGCCGCCACCCGCGACCCGCAGATGCAGGCGCAGTTGGCCCAGATAAACGAGGAACTCAAGCGTAACGTTTCGTTGATCGCCCGGCAGC GCGAAGAGGCCGCCGGAAACCTGATACAGTCGGCGGCACTGGTCGCCGAGACGATCAACAACTACAACATACGCCTGACCAACCTCAAGAAGGACAGGGA GAAAGCCGTGGCAGCCAGGGATCAGGCGACCGCCCAGCTCTATGCCGGCGCCATCGCCAACGGGCGCAGCGCCCTCGATGGCGCATTGGCCATCTACATC GACAACCTCGCCACCGGCACCCGTTACACCGACGCGGTGATCCAGGCGCAGTTCCAGCGCATCCAGGAAGAACTCAATCGCAACCCGGTTCTGGGCAAGA GCCTGGTCAAGCGCGCGACCCTGTTCGTCAAACACGTCGGAGATTATCGCCAGCAGCACCGGGCCGAGCCGGAGGCGGTATTGAAGGAATTGCTCGCGTC CAGCGGGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGAGTTCCGTCCGGCCCCTCTCGGCAGCCGGGCGGTTCATCAAACCAGGAGTGAGATGCAATGAGCCAACCCAGCGAAAACCGTTTGATCACCTCGGCG CGCTACGCGCTCTGCCTGTTGACCGCCAGCGGCGTGCTGCTCAGCGGCTGCGCCAGCAGCGGCGTCGGCTCGGTCGCCCAGACCACCCGCGCGGAATACT ACCCGTCCTGCTACGAGCCGGTGTCGCACCTGCGCAGCACCGATAACGCAGTGCGCAATTCGGCCATCACCGGCGCCATTACCGGCGGCCTCCTGGGCGG CCTGGCCGGCGGCCTGGCCAGCGACGAGAACCGCGGCCGCAATGCCGCCCTCGCTGCCGCAGGCGGCGCCCTGGCCGGCGGCGCGGCGGGCTACTACATG GAGAAGCAGAAGCAGATCAGCGATGACCGCGCGCGCATCGGCTCCTACGGTACCGACGTCGACCGCAGCACCGTCGAGATCAACCGTAGCGTGGCCTACG
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| Amino Acid Sequence |
>type VI secretion protein
MFEKAILPLALGACLAFAAPAWAEGDSPDNPKPLADDVALPLPCGGEMVFRHVYVLAEGALDDREVNLGYAFNEGEAGYQQSFISGYRRDYVNGQFSLAD LAPAWQQKLSASLPKPAAGTPLKPMLYFIGKYEVTARQYAAVMSQAAALSGQGEAPACDVPDGMAARLPKVNLSRFDAERFGAVYSAWLLKNHPELLPVS GRGKNPEDGGIGFVRLPTEVEWEFAARGGQAVSRQELEGRLFPRKVEGSDQEGPLGDWAVYNQVAGGTGQAARLLPVGMKRPNPLGLFDVIGNAAEMVQE SFQLVHAGRRQGTYGGFVVKGGNYLEGEMTLFTGMRREYPLFAADGSEQRNETTGFRVAIGALSAPRSRYPELFAQWQKEGRLAALTDAIDDAQDPTKQL DGIIAATRDPQMQAQLAQINEELKRNVSLIARQREEAAGNLIQSAALVAETINNYNIRLTNLKKDREKAVAARDQATAQLYAGAIANGRSALDGALAIYI DNLATGTRYTDAVIQAQFQRIQEELNRNPVLGKSLVKRATLFVKHVGDYRQQHRAEPEAVLKELLASSGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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