Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0119685

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00023.23_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGGTGCTGGGCATTCTCTACGAAAGCTACATCCATCCGCTGACGATTCTTTCTACCTTGCCCTCGGCCGGGGTCGGCGCCTTGCTGGCGCTGTACGTCA CGGGTGGCGAGTTCAGCCTGATCTCGCTGCTGGGCCTGTTCCTGCTGATTGGCGTGGTGAAGAAGAACGCCATCCTGATGATCGACCTCGCCCTGCAACT GGAGCGCCACCAGGGCATGACGCCGGAAGAGTCGATCCGCCGCGCTTGCCTGTTGCGCCTGCGGCCGATCCTGATGACCACCCTGGCCGCCATCCTCGGC GCCTTGCCGCTGCTGCTCAGTCGCGCCGAGGGCGCGGAGATGCGCCAGCCGCTGGGCCTGACCATCATCGGCGGGCTGGTCGTAAGCCAGGTCCTGACCC TTTACACGACGCCGGTGGTGTACCTGTACCTCGACCGCCTGCGCCACCGTTTCAACCGTTGGCGCGGCGTGCGCACCGACGCCGCCCTGGAAACTCCGCT
DNA Sequence for Gene
>Q378_RS0119685
ATGACTTTTGCCCAGACTCCACTTCACCGTGCCCTGCAGCTGCTGACCCGAGGGCGAGGCTCGCGCCTGCTCGGTGCCGGCCTGTGCGTGGCGCTGCTCA GTGCCTGTACCTTGAGCCCGGACTACCAACGCCCCGAACTGAGCACGCCGGCGCAGTTCAAGCAGGCCGAAGGCTGGACCCGGGCCAGCCCGTCCGATGC CATCGCCCGCGGCGCCTGGTGGGAAGTTTATGGGGATGCCCGGCTCAATGCGCTGGTCGATGAGCTCAACCGCAGCAACCAGACGGTCGCCCAGTCCGAA GCCCAGTACCGCCAGGCGCAGGCCCTGGTGCGCAGCAGCCGTGCCTCGTTGTTCCCCACTTTGGACATGAGCGCCGGCAAGACGCGTTCGGCGCAAGGCA CCGGCAGTTCCAGCTCGAGCCTGTCGAACAACAGCAGCGGCATCCGCAATACCTACAATGCGCAGCTCGGCGTGAGCTGGGAAATCGACCTGTGGGGCAA GCTGCGCGAAACCCTGAACGCCGACGAAGCCAGCGCCGAGGCCAGCTTTGCCGACCTCGCTGCGATCCGCCTCAGTCAGCAGTCGGAACTGGTGCAGAAC TACTTGCAGTTGCGTGTGATCGATGAACAGAAGCGCCTGCTGGAAGCCACCGTGGCGGCTTACCAACGCTCGCTGCGGATGAACGAAAACCAGTACCGTG CCGGTGTTGCCGGCCCGGATGCGGTGGCGCAGGCGCGCACCCAGCTCAAGAGCACCCAGGCCGACCTGATCGACCTGATCTGGCAGCGCGCCCAGTTCGA GAACGCCATCGCCGTGTTGCTGGGCCGGGCGCCCGCCGATTTCGCCCTGGCCGACAGCAAGGACATCCCGGCTTTGCCGCAGATTCCCGTCAGCCTGCCG TCGCAGCTGCTTGAACGGCGACCGGACATCGCCTCGGCCGAGCGCAATGTCATGGCGGCCAACGCCAGTATCGGCGTGGCTCGCGCTGCCTACTTCCCGG ACCTGAGCCTGAGCATGAGCGGTGGCTACTCCAGCAGCAGCTTCAGCAACTGGATCGAACTGCCCAACCGCTACTGGTCGGTGGGGCCGCAGTTGGCCTT GACCCTGTTCGATGCCGGCAAGCGCAGCGCCGAGGTGGATCGCACCGTGGCGGTGTATGACCAGACCGTGGCGCAGTACCGCCAGACGGTGCTCGACGGG TTCAAGGAGGTGGAGAACTACCTGGTGCAACTGAAGGTGTACGCCGACGAGGCCGTGGTGCGCCAGGAGGCGCTGGATGCCGCGCGCGAGTCGCTGCGCC TGACCGAGAACCAGTACCGTGCCGGGTTGATCGGCTACCTGGACGTGGTCAACGTGCAGGCCACCGCATTGAGCAACGAACGCAGCGTGCTGAACCTGCT GGAGGGTCGACTTGTGGCCAGCGTACAGCTGATCGCCGCGCTGGGTGGCGGCTGGGATGCCGAACAGGCATTCGCCCAACAGGAGTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AAACCCCATCGCCGGCAAGCCGGCTCCCATAGGTACACCACAGTTCCCGAGACCTGAGTTGTACCTGTGGGAGCCGCCTTGCCGGCGATGGGGCCGGTGC TGACATCCTGCCGGACCCATTCCCATTCGCAAAAACCCCGTGCGTTTCGCCAAAGCTTGAGTACAATCGTCAGTTTTTCCGGGCCCTCCTGAGCCGACGC TGGAACTCCCCAATGCTGACCGGTAGCTACTCCTTTTCGCTGGTGTTGATTTCGCTGTGCGTGGCCATCCTGGCGTCCTATACCGCCCTTGATCTGACCG GTCGCATCGCCACCGCCAAGGGAAGGGCGGTCTACCTGTGGATGGCCGGTGGCGCCTTGGCGATGGGCATCGGCGTCTGGTCGATGCATTTCATCGGCAT GCTTGCCTTCAGCCTGCCCATCGACCTGGGCTACGACATCGGCCTGACCGTGCTGTCGTTGCTGATCGCCGTGTTGTCGTCGGGCTTTGCCCTGTGGCTG
Amino Acid Sequence
>RND efflux system outer membrane lipoprotein
MTFAQTPLHRALQLLTRGRGSRLLGAGLCVALLSACTLSPDYQRPELSTPAQFKQAEGWTRASPSDAIARGAWWEVYGDARLNALVDELNRSNQTVAQSE AQYRQAQALVRSSRASLFPTLDMSAGKTRSAQGTGSSSSSLSNNSSGIRNTYNAQLGVSWEIDLWGKLRETLNADEASAEASFADLAAIRLSQQSELVQN YLQLRVIDEQKRLLEATVAAYQRSLRMNENQYRAGVAGPDAVAQARTQLKSTQADLIDLIWQRAQFENAIAVLLGRAPADFALADSKDIPALPQIPVSLP SQLLERRPDIASAERNVMAANASIGVARAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAGKRSAEVDRTVAVYDQTVAQYRQTVLDG FKEVENYLVQLKVYADEAVVRQEALDAARESLRLTENQYRAGLIGYLDVVNVQATALSNERSVLNLLEGRLVASVQLIAALGGGWDAEQAFAQQE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site