Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0116245

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00416
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00416
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00416
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 288 299 3.7E-8
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 152 166 3.7E-8
SUPERFAMILY SSF56349 DNA breaking-rejoining enzymes IPR011010 DNA breaking-rejoining enzyme, catalytic core 85 322 5.89E-72
Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type 88 291 2.5E-32
Gene3D G3DSA:3.30.66.10 DNA topoisomerase I domain IPR035447 DNA topoisomerase I, N-terminal domain superfamily 12 94 6.3E-33
SUPERFAMILY SSF55869 DNA topoisomerase I domain IPR035447 DNA topoisomerase I, N-terminal domain superfamily 29 90 2.48E-22
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 129 148 3.7E-8
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 173 189 3.7E-8
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 238 252 3.7E-8
Gene3D G3DSA:1.10.132.120 - - - 97 327 1.8E-88
Gene3D G3DSA:3.90.15.10 Topoisomerase I; Chain A, domain 3 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type 120 239 1.8E-88

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.