Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0115455

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00015.15_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGGCTGACCAGGTGATCGACCTGATCAAGGCGGAGCAAGCCAAGGGCATCAGTCTGTCGCGGATCTTCCTCGCGGGGTTCTCCCAGGGCGGCGCCGTGG TCCTGCACACCGCCTATATCAGGTGGCAGGAAGCGCTGGGTGGGGTGATCGCCCTGTCCACCTATGCCCCGACCTTCACCGACAGTCACCAGCTGAGCGC CTGCCAGCAGCGCACCCCCGCCCTGTGCCTGCACGGTATGCACGATTCGGTGGTGATCCCGGCCATGGGCCGGACGGCCTTCGAATACCTGAACACCTGG GGTGTCGCCGCGCGCTGGCACGAGTACCCCATGGAGCATGAAGTGGTGGTCGAGGAGTTGAGCGATATCCACGACTGGTTGAGCAAGCAGTTGCAATAAG CAAGGCTCGCCTGTAGTTGTGGGAGTATTCCGCTACGCTGCGCCCGGATCTTGCTTTACACTGCCGGGCGTACATTCCTTAACCAGTTGACGAGACGATC
DNA Sequence for Gene
>Q378_RS0115455
GTGCTCAAGGCACTCAAGAAAATATTCGCCAAGGGGGACGCCGCCCCTCAGGCCGTCGCGCCTGCTGCCGGCGTCACGCCGCCTGCGCCCGTCGAGCCAC CCGCGGCCCAGCCTCAGCCACCGCGCAAGGCACCCCACACCACGGCTCGCGACCAGGACCAGGTTGAAACGCCCGCCGCCGCACCGGCTGCCGAGAAACC GGCCAAGGACAAACCGCGCCGCGAACGCAAGCCCAAGCCCCAGGCCAGCCTGTGGAAGCCGGAAGACTTCGTGGTCGAGCCGCAGGAAGGCAAGACCCGC TTCCATGACTTCAAGCTCTCCAACGAGCTGATGCATGCCATCCACGACCTCGGTTTCCCGTACTGCACGCCGATCCAGGCCCAGGTACTGGGCTACACCC TGCGTGGCCAGGACGCCATCGGCCGCGCCCAGACCGGTACCGGCAAGACCGCCGCGTTCCTCATCTCGATCATCTCCCAGTTGCAGCAGACGCCACCGCC CAAGGAGCGTTACATGGGCGAGCCGCGCGCGCTGATCATCGCCCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCTGTCGCCCTGACCAAGTAC ACCGGCCTGAACGTCATGAGCTTCGTCGGTGGCATGGACTTCGACAAGCAGCTCAAGGCCCTGGAGGCCCGCCATTGCGACATCCTGGTGGCCACCCCAG GCCGCCTGCTGGACTTCAACCAGCGCGGCGAAGTGCACCTGGACATGGTCGAGGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCAT CCCCCAGGTACGGCAGATCATCCGCCAGACCCCGCCGAAGAGCGAACGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGAAGACGTGATGAACCTGGCC AAGCAGTGGACCACCAACCCGGCGATCGTCGAGATCGAGCCGGAGAACGTCGCCAGCGAAACCGTCGAGCAGCACGTCTACGCGGTGGCCGGCAGCGACA AGTACAAGCTGCTGTACAACCTGGTGACCCAGAACCAGTGGGAACGGGTGATGGTGTTCGCCAACCGCAAGGACGAAGTGCGGCGCATCGAGGAAAAACT GGTGCGCGACGGCATCAATGCCGCGCAACTGTCGGGGGACGTGCCGCAGCACAAGCGCATCCGTACCCTGGAGAGCTTCCGTGAAGGCCGCATCACCGTG CTGGTGGCGACCGACGTGGCTGGCCGCGGGATTCACATCGACGGCATCAGCCATGTGATCAACTTCACCTTGCCGGAAGACCCGGACGACTATGTGCACC GTATCGGCCGTACCGGCCGTGCGGGCAGCAGTGGTGTGTCGATCAGCTTTGCCGGCGAGGATGATTCCTACCAGCTGCCGGCGATCGAGGAGCTGCTGGG GCGTAAGATCAAGTGTGAAATGCCGCCGGATGAGCTATTGAAGCCAGTGCCGCGTAAACATCATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TATCGGGGCTGCTTTGCAGCCCAATCGCCGGCAAGCCGGCTCCCACACTTCGAGAACGGTGGAGGTCCTGTGGGAGCCGGCTTGCCGGCGATCCGGGGCA AAGCCCCGGCCACCCCCTTGACACCTACCAGCGCCCAGCCGCCTCCTGGTCACCCTGCTTCCCTTCCACCCACCTCGGCCCCTCCTGGGTATTTTCCTTC TTCCAGAACGGCGCCCGCGTCTTCAGGTAGTCCATGATGAAGTTGCAGGCATCGAACGCCGCCTGCCGATGGGCACTTGCCACGCCGACGAAGACGATCG GCTCACCCGGCTCCAGCGCGCCGATCCGGTGCAACACCTCGACCTTGAGCAACGGCCAGCGCTGCTCGGCCTCCACCACGATCTTGGCCAGCGCCTTCTC GGTCATGCCCGGATAGTGCTCGAGGAACATCCCGGCCACGTCGAGGCCATCGTTGAAATCACGCACATAACCCACGAAGCCGACCACAGCCCCCACGCCG
Amino Acid Sequence
>ATP-dependent RNA helicase RhlB
MLKALKKIFAKGDAAPQAVAPAAGVTPPAPVEPPAAQPQPPRKAPHTTARDQDQVETPAAAPAAEKPAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTR FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAVALTKY TGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLA KQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNQWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITV LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSYQLPAIEELLGRKIKCEMPPDELLKPVPRKHH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site