Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0114215
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00013.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGGCTGTCGGCAACCAGGTCGGGCAGGCTCACGCTCAAGCTGTGCCAGCCGATATCAGGAAACTTGCGTCGCAACGGGCCGACTGCGTTCGGCCAGTCG GCATTTTCACCGGCGCCCGGAACGATGATCACCGTGCCTTGCGGGTCGCTGTCGTTGGCCGGCTTCCACAGGGCCAGGAAGCTTTCGCTGCCGGCCTCAA GGGTCTGTTGCTCAGCCTTTGGCACCAGGCGTTCCAGGGCCTGTGCATCTTCCTGACTACGCTCCAGCAGAGGCGGTCGCGGCGCGGGTGCGGCAGCGGC TTGCGCCGCCGTCGGTGGTTTTTCGGCCTCGGCGGCCAAGGCGCCGAGCGGCATGAGCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTG AACATGAATCAACCCAAGGCCAGAGTAGTACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCCTTGCCAAGACGAGCGTGTGA
|
|
| DNA Sequence for Gene |
>Q378_RS0114215
ATGAAGCGATTGCGTCGCCTGTGGGTTATCGGCTGCCTGTGGCTGCCCTTGATCGCCTTGGCAAGGCCGGAGGTGGCGCCTGCGGTTGCCCTCGAGCCCG TTCAGCAGCAATGGCTGGAAAACCACCGCAGTCTGCGCGTCGGCCTGGTGTTGCAGGCACCCTATGCCCAGTTCGACCGTCGCCTGCAGCAGCTTTACGG TGCCAATGTCGAGCTGGTGAACGGGTTGGCCGAGGCGCTCAAGCTGGACCTGACCTGGCGCCACTTCGCCGACCAGGCCAGCCTCGAGCACGCCCTGCAG GCTGGCGAAATCGATTTCGCCCCAGGCCTGACCCAGACCCCGAGCAGCCTGCGCCTGTGGTTGTTCAGCGATCCCTACATGCGCGTGCCGCAACTGGTGG TAGGGCCACGCACCGGGGCGCTGGCCGTGGAACTGGAAAAACTCGAAGCCGACGACCGTGTTGCGGTACGCATGCCCAGCGTGTTGGCCGATTACCTGCG CGGCAATTACCCCAACCTCAATCTGCAGGGTGTGCCCAGCGAGCGCGAAGCCTTGCAACTGGTGGCCGGCGGCCAGGCCAGCCTTGCCGTGCTCGACGAG GCCCAGCTCAGCCGGCTGTCCCGCGAGAGCGAGTTCGGCGAGCTGGTGGTGGTGGGCGACATCGGCCTGCCGCAGTTGCTGCGGATCGGATCGCGACGGG ACTGGCCGATCCTGGCCGATGTGCTCGAGCATGGCCTGCAGGCCATGCCGGCCAAGCAGCTGGAACAACTTCATCAACGCTGGTTGCAGCCCAGGTATCC GCGCCTTGGCGATTCGACCGGCTTCTGGCAGAACCTGGCCTTGCTGTTCGGCATGCTGCTGCTGTGTGCCCTGGCCACGTTGGTGTGGCAGCGCCGGCAG CAGCGTCAGCTCGAGCGCAGCCTGCTGGCCGCCAGGGAGAACCTGAACGAGCGCCAGGTGCGCGAAGAGGCGCTGCGCCTGAGCCAGTTTGCTATCGATC AGAGCACGGTGGGTATTCTCTGGGTCAATTGGGACAGCCATGTGCGCTATGCCAACCATGCCGTGGAGCGCATGCTCGGCTACGCCGAGGCCGAGTTGCT CGAGCGCCCGTTGATCGACTTCGAGCCGAACCTGAGCATGGACCACTGGCTACCACTGTGGAAAGCCGCGCGCGCCGGGGAGGGCGGTGTCCGGCAGTTC GAGACGCAGTGCCTGAGGGCTGATGGCAGCCTGCTGCCCGTGGAGTTGTCGCTGAGTTTCCTGCGTTTTCGCGATGCCGAATACCTGGTGGTCTACCTTG CCGATGTGACCGAACGGCACCGTGCGCTGGCCGCGCTGCGCGAAAGCGATGCGCGGCTGAAAGGGATTGCCGGCAATGTGCCGGGCCTGGTGTTTCGTCT GGAGCCTGCCCCCGCCGAGGGTGAGCCGGAGTTTCCCTACATCAGCGAAGGCAGCGAAGCGCTGGTCGGCTACACGCCCGCGCAGATACAGCATCCGCGC ATGGGCTTGCGCAACCTGGTGCACCCTGAAGACCGGGCCCACTACCATCAGGTGCAAGACCTGGCCATCGCCAGTGGCCAGGACTGGTCCTGGCAGGGGC GTATCCTCACTCGCGACGGGGAACAGCGCTGGGCCGACATCAAGGCCAGTGCCCGGCAGCTGGCCAATGGGCGAGTGGTGTGGGACGGGGTGGTCTGGGA CATTACCCAGGGCAAGCGGGCCGAGCGGGCGCTGGGCAGGTCACAGGAGCAGCTGCGCGAGCTGTCGGCGCACCTGGAAAGCGTGCGCGAGGAAGAAAAA GCCCGCATCGCCCGGGAAGTGCATGATGAACTGGGGCAGATGCTCACGGTGCTGAAACTCGAGGTGTCGATGTGCGAACTGGCCTTCGCCGAACTGGACC CGGCGCTGAACGAGCGCCTGGCCAGCATGAAGCGCCTGATCGCCCAGTTGTTCCAGATGGTGCGCGATGTCGCCACGGCACTGCGCCCGCCGATCCTGGA CGCCGGCATCGCTTCGGCCATCGAATGGCAGGCACGGCGTTTCGAGTCCCGCACGCAGATTCCCTGCCTGGTACAGGTGCCGGAAAACCTGCCAGCATTG AGCGATGCCAAGGCCACCGGGCTGTTCCGCATCCTGCAGGAAGCGTTGACCAATGTCATGCGCCATGCCCAGGCGCACAGCGTGGAGATCGAGCTGGTAC GCGAAGGTGGGCTTCTGCGCATGACCGTCAGCGATGACGGCCGCGGGTTTTGCCGCGACCAGCCGAGGCCGACCTCGTTCGGCCTGGTGGGGGTGCGCGA ACGGGTATTGATGCTGGGCGGCAGCATGGCGCTGCACAGCGAACCGGGCGAGGGCACCAGCCTGAGCGTGACCATTGCGTTGGAATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GAGAGCGAGCGTGATTCGAGTGCTGGTGGCCGAAGACCACACCATTGTCCGTGAAGGCATCAAGCAGTTGATCGGCCTTGCCAAGGATATGCAGGTGGCA GGGGAAGCCGCCAATGGCGAGCAGTTGCTGGAAACCCTGCGCCATACACCGTGCGAGGTTGTCCTGCTGGATATTTCCATGCCCGGTGTAAGCGGCCTCG AGGCCATACCGAGGATTCGCGCGATGGCCAGTCCGCCGGCGATCCTGATGTTGTCCATGCACGACGAGGCGCAGATGGCAGCCCGGGCGCTCAAGGCCGG CGCCGCGGGCTACGCCACCAAGGACAGCGACCCGGCCTTGCTGCTGACGGCGATCCGCCGGGTGGCCGGAGGCGGGCGCTACATCGACCCGGCGCTGGCC GACCGGATGGTGTTCGAGGTGGGGCTGACCGAGACCCGGCCCTTGCATACCTTGCTCTCGGAGCGGGAGTTCTCGGTGTTCGAGCGCTTGGCCCAGGGCG
|
|
| Amino Acid Sequence |
>cyclic nucleotide-binding protein
MKRLRRLWVIGCLWLPLIALARPEVAPAVALEPVQQQWLENHRSLRVGLVLQAPYAQFDRRLQQLYGANVELVNGLAEALKLDLTWRHFADQASLEHALQ AGEIDFAPGLTQTPSSLRLWLFSDPYMRVPQLVVGPRTGALAVELEKLEADDRVAVRMPSVLADYLRGNYPNLNLQGVPSEREALQLVAGGQASLAVLDE AQLSRLSRESEFGELVVVGDIGLPQLLRIGSRRDWPILADVLEHGLQAMPAKQLEQLHQRWLQPRYPRLGDSTGFWQNLALLFGMLLLCALATLVWQRRQ QRQLERSLLAARENLNERQVREEALRLSQFAIDQSTVGILWVNWDSHVRYANHAVERMLGYAEAELLERPLIDFEPNLSMDHWLPLWKAARAGEGGVRQF ETQCLRADGSLLPVELSLSFLRFRDAEYLVVYLADVTERHRALAALRESDARLKGIAGNVPGLVFRLEPAPAEGEPEFPYISEGSEALVGYTPAQIQHPR MGLRNLVHPEDRAHYHQVQDLAIASGQDWSWQGRILTRDGEQRWADIKASARQLANGRVVWDGVVWDITQGKRAERALGRSQEQLRELSAHLESVREEEK ARIAREVHDELGQMLTVLKLEVSMCELAFAELDPALNERLASMKRLIAQLFQMVRDVATALRPPILDAGIASAIEWQARRFESRTQIPCLVQVPENLPAL SDAKATGLFRILQEALTNVMRHAQAHSVEIELVREGGLLRMTVSDDGRGFCRDQPRPTSFGLVGVRERVLMLGGSMALHSEPGEGTSLSVTIALE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|