Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0109680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAAGCCTTCAACATGCTCGAAAGCGGCCGCGCCGTGGCCTTCATGATGGACGACGCCCTCCTCGCCGGTGAAATGGCCAAGGCCCGCAAGCCGGCCGAC TGGGTCATCACCGGCACCCCGCAGTCGTACGAAATCTACGGCTGCATGGTGCGCAAGGATGACGCAGCGTTCAAGAAAGCGGTCGACGACGCCATCGTTG CCTACTTCAAGTCGGGCGAAGTCAACAAGAGCTACGACAAGTGGTTCCAGCAACCGATTCCGCCAAAAGGCCTGAACCTGCAGTTCCCGATGAGCGACGA GCTGAAAAAACTGATCGCCGAGCCGACCGACAAGGCCGCGGACGAGAAGAAGTCCTGATCCTCAGATAGTGGCCTGGTGCGCAAGCGCACGAATCAATCC TGCAGGCCACTCATTAGTGTCTAACCTTTCATCCGAGGGCGCATGCCGCCCTTGGATGCTCGAAGGTGCCCGTGAAACAACCGTCTGAGGGGAAATCCCG
|
|
| DNA Sequence for Gene |
>Q378_RS0109680
ATGAATTACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGCGTGGGCAGCGAAACCTATCTGGACTGGTACATCACCGGTTTGGGCTGGACCATCG CCATCGCCATCTCCGCCTGGATCATCGCGCTGCTGCTGGGCTCTGTGCTCGGCGTCATGCGTACCGTGCCGAACCGACTGGTCTCGGGCATCGCCACCGC CTATGTGGAACTGTTCCGCAACGTGCCGCTGCTGGTGCAGCTGTTCGTCTGGTACTTCCTGGTACCGGACCTGCTCCCCGAAGGCCTGCAGGAATGGTTC AAGCAGGACCTCAACCCGACCACTTCGGCGCTGATCAGCGTGGTCATCTGCCTGGGCCTGTTCACCGCCGCCCGCGTTTGCGAACAGGTGCGTACCGGTA TCCAGGCGCTGCCCAAAGGCCAGGAAGCCGCCGCCCGTGCGATGGGCTTCAGCCTGCCGCAGATCTACAACAACGTGCTGCTGCCGCAGGCCTACCGGAT CATCATTCCGCCGCTTACCTCCGAGTTCCTCAACGTGTTCAAGAACTCCTCGGTGGCATCGCTGATCGGCTTGATGGAGCTGCTGGCACAGACCAAGCAG ACTGCCGAGTTCTCGGCCAACCTGTTCGAGGCCTTCACCCTGGCCACGTTGATCTACTTCACCCTGAACATGGGGTTGATGCTGCTGATGCGCATGGTCG AGAAGAAAGTCTCGGTGCCGGGCCTGATTTCCGTGGGAGGCAAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATGGACATGGATTTCAGCGAAATCATCCCGGCTTTGCCAGCCCTCTGGGAAGGCATGATCATGACCTTGCAGCTGATGGTCATGGGCGTGGTCGGCGGTA TCGTCCTCGGTACCCTCCTGGCCTTGATGCGCCTGTCGTCGAACAAGCTGATGTCGAACCTGGCGGGTGCCTACGTCAACTACTTCCGCTCGATCCCGTT GCTGCTGGTGATCACCTGGTTCTACCTGGCAGTGCCATTCGTGCTGCGCTGGATCACTGGTGAAGATACCCCGGTGGGGGCCTTCACCTCCTGCGTGGTG GCCTTCATGATGTTCGAGGCCGCCTATTTCTGCGAAATCGTGCGGGCTGGCGTGCAGTCGATCTCGAAGGGCCAGATGGGCGCCGCCCAGGCCCTGGGCA TGACCTACGGCCAGACCATGCGCCTGATCATCCTGCCCCAGGCCTTCCGCAAGATGACCCCGCTGCTGCTGCAGCAGAGCATCATCCTGTTCCAGGACAC
|
|
| Amino Acid Sequence |
>polar amino acid ABC transporter inner membrane subunit
MNYNWDWGVFFKSTGVGSETYLDWYITGLGWTIAIAISAWIIALLLGSVLGVMRTVPNRLVSGIATAYVELFRNVPLLVQLFVWYFLVPDLLPEGLQEWF KQDLNPTTSALISVVICLGLFTAARVCEQVRTGIQALPKGQEAAARAMGFSLPQIYNNVLLPQAYRIIIPPLTSEFLNVFKNSSVASLIGLMELLAQTKQ TAEFSANLFEAFTLATLIYFTLNMGLMLLMRMVEKKVSVPGLISVGGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|