Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0109255
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGGTCCTGGCCCAGAGCGGCCAGGTCATCCGCATCACCAGCCCGGTGCGCTGGGTGGTCGGCTTCCAGGGCTTCGAGCTGGCGCGCTTTCGCGCCGTG ATCAACGACCCCAATCGCAGCAGCGCCGAGCTGTACCGCTTCGTGGTGCACTACCTGGTGCTGTTCTACTGCCTGAGCAAGTCGCCCGGCCTTGGCCGGC TGTTCGAGGGCCTGCGCTTCGGCCTGAGCTTCGAGCGCCTCAAGGGCCTGGGCGACTTGCCGTTCTGCATCATCGGCGCGCCGGTGCGTTCGGAACTGCC CGACGACGCGGTCATCCGCAGCAGCACGCAGATCGCCGGCAACACCAGCTTCGAAGAGCTGGTGGGCCGCGAAAACATCCTGGAAATGAACGACGAAATT CGTCAGCGCCTGCTGCTGACGATCGAAGGACTGTAACGCGCGTCGCCCGTCAACGGGCCGCGCCATGTTTCGCAGCGAATCGCTCGCACTGGAGATCACG
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| DNA Sequence for Gene |
>Q378_RS0109255
ATGGCGAAGAAGGAAAGCACCCAGCACAAACTCGACCGCGTTCGCGCGCCACGGGTCCACATCACCTACGACGTGGACATCGGCGATGCCATCGAGAAGA AGGAGTTGCCCTTCGTCGTCGGCGTGCTGGGCGACTTCTCCGGCAACCCGCTGGAGCCCTTGCCCAAGCTCAAGGACCGCAAGTTCGTGTTCATCGACCG CGACAACTTCAACGGCGTGCTCAAGGGCATCAAGCCGCGCCTGACCTACCGCGTCGACAACACCCTGGCCAAGAACGGCACCCAGCTGGGCGTCGAGCTG AACTTCAACAGCATGGAAGACTTCGAGCCGCAGAACGTGGTCAAGCAGGTCGAGCCGCTGCGCAAGCTGCTGGAAGTGCGCAACAAGCTGGCTGACCTGC GCAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGACGTGCTGCAGAACACCGAGAAGCTCAAAACCCTGGGCAAGGAATTCGGTCGCGA GGCCGCCGTCCCCGCCACCGACGGCAACGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGGAGCCAGACGATGACCGACAAGCAAGCACTCCCCCAGCAGGACAGCGACCTGGTCGAGGTGGAAAACTTCGCCCCGCAGGCCTCGCTGCTCGACAG CATCATCTCGCAGAGCCGCGTGGCCCGCTCCGACACCGAGCGCAGCCGCACCCGCGACCTGATCGGCGAGCTGGTCAACCAGGTGCTCGAAGGCGAGATG ACGCCGAGCAAGGACCTGATCGCCGTGCTCGACGCGCGCATCGCCGAAATCGACACGATGCTCTCCGAGCAGATGAACGAGATCATGCACGCCCGTGAGT TCCAGCAGCTGGAAGCCTCCTGGCGCGGCCTGAAGTACCAGGTCGACCAGACCGAGACCAGCACCACGCTGAAGATCCACCTGCTCAACGCCTCGAAGAA GGACCTGGTGCGCGACCTCAAGGCCGCCAGCGAATTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAAGAAGAGTACGGCACCTTCGGTGGCGCGCCG
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| Amino Acid Sequence |
>type VI secretion protein
MAKKESTQHKLDRVRAPRVHITYDVDIGDAIEKKELPFVVGVLGDFSGNPLEPLPKLKDRKFVFIDRDNFNGVLKGIKPRLTYRVDNTLAKNGTQLGVEL NFNSMEDFEPQNVVKQVEPLRKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTLGKEFGREAAVPATDGNE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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