Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0102110

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTCGCTCGGATGCAGATGGACCCGACCCGCTACAAGGACGTACTGGAGTTCAAGTACCTCTGCCTTTGTCTGGGCTTCATGGGCAAATACGGCCAGCAAC ACAACAGCAAGGACTCGCTCAATACGCTCATCCTCAAGCTGCATCGCATGCTTCGCGCGCAACGTGGAGACACGCCCGAGCACCTGACCGACACACCTGA CAACGTCGCATCGCGCCATTACCGCCAGGCCCGGCAATGGCCGCTCTGGACCCCTTGGGTCGTCGCCACAATCGTGCTGGTTGCGACCTATCTCTATTTC TCCATCAGCCTCGACAGCAGTACCGAGCAGGTGTTGCTGAGGCTCGAGGGCATCCTCAAGCCCTGAGCCTGATGCAACACCCAAAGCACAACACATGACG GCAGGAGGGCAAGCAACCCAGACAAAGAACATCCACTCCTACACCTATGGCGAAACGGTCTCTTTCGGCCACTCAAATCAACGATACAAGGAAGATTTAC
DNA Sequence for Gene
>Q378_RS0102110
ATGGCAACTCCCGCCTACATCAGCATCAAGGGTAAAACTCAGGGCCATATCACCCAGGGTGCCTTCACCGCCGAGTCGGTTGGCAACATCTACCAGGAAG GTCACGAAGACCAGATTCTTGTCCAGGAAATCGAACACCTGATTTCCACGCCAACCGACCCGCAAAGCGGTCAGCCTTCTGGCCAGCGCGTGCACAAGCC GTTCGTGTTCACGGCAACGCTCAGCAAGGCCACTCCCCTTCTGTACCAGGCCTTGGCCTCCGGCGAAATGCTGCCGGAAGTTGAAGTGATGTGGTACCGC ACCTCTTCCGAAGGCAAACAGGAATACTTCTTCTCCACCCAGCTGGAAGACGCCACGATCGTCAGCATCAACACCGTCCTCCCCCATGCCCAGGACGAGG CCAAGGCTTCGTATACCCAACTGGTCAAGGTAGCCATGGCCTACCGCAAGATTACCTGGACCCATGTCATTGCCGGTACCGAGGCCTCGGACGATTGGCG CAAGCCCATGGAAGGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCGATAGCCACCTCCGGCAACCGGCGTGGCAGGCGTCGGTTGCTCACCACCCGGGATCATCGAGCCCCACACTAAGTCCGGTAAGGATTTCATATGGCA GCCCAATCCGATTTACGCTTTACCTTCACTGCGGGCGAGGACGGCGTCTACGACTTCGAGGTCGTCGAGTTTCACCTCGTCGAAGGTCTATCCGAAACCT TCCGGCTCGACGTGGACCTGAGTTGCGCGAACTCCGCCGTAGATTTTGGCCTGATACTTGACCATCAGGCGCTACTCACCCTCTGGCAGGCGAACCGGCC TGTACGCTACCTGCACGGCTCGGTGTCCTCATTCCAGCAAGGCGACACGGGCTTCAGGCGGACCCGCTATCGCGCCACCGTGGAGCCCCGTCTGGCACGA ATGCGCCTGGCTTCGGACTGGCGCATTTTCCAGGGCCCCAACGCGCCCGAAATCGCCAAGGTCCTGCTCACGAAGCATGGCCTCACCCTGGATTACGAGC
Amino Acid Sequence
>Hcp1 family type VI secretion system effector
MATPAYISIKGKTQGHITQGAFTAESVGNIYQEGHEDQILVQEIEHLISTPTDPQSGQPSGQRVHKPFVFTATLSKATPLLYQALASGEMLPEVEVMWYR TSSEGKQEYFFSTQLEDATIVSINTVLPHAQDEAKASYTQLVKVAMAYRKITWTHVIAGTEASDDWRKPMEG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site