Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0102100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCACGCCGATGGAGCGGGACACCGCAGAAACGGATGCACACGTCCATCTGGGCGTGGGGCAATACAACCGCGCAGCGAGCATTGCCCCAACGCCCAACG CGCGCAGGACCGCTGTCACCGCCACACCGATTGTCTTTCGTGTCTTGCAGCTCAAGGACGACTCCATGCTGGAGAACGCGCCCCCTGAACTGCTGCAAGA CAATCCCGAGAAGGCTTTGGGCAGCACGCTCGTGGCGATGGACGACTACGCGCTGGTTCCGGGGCAATTCAAGTTCATCGAGTTCGCGTCCATCGAGGAA AAGTCCCGCTACATCGCCGTGGTCGCCCAATTTCACGACCCCAGTGCCGAACGCTGGTACGACGTATTCCGCGTCGAGCCACGCGGGCGCAAGTACCCCC TGATGGTGATGCTGCAGACCACCCGTGTCGCCATCACCGACGAGCGTTTCCGGCCTGCGCAGGACGACCTCTGCCTGCCCCCTCCTGCGAGTACCTACCG
|
|
| DNA Sequence for Gene |
>Q378_RS0102100
ATGACCACACGCAACCCCGTCGCCTGGAGCGAAGGCCTGTTCGTCAAGCCCCAGCATTTCCAGCAGACCACCCGGTATCTGGAGCACTACATCAACGCAC GCCATGCCAGCCGGTACGGGTACGGCTTTTCCGAACTGGAGCTGAACCAGGAGTTTCTTGCCTTCGGCAAGATTGCCATCGTACGCGCACGAGGCATCAT GCCCGACGGTTCGCTGTTCAACATTCCCAACGACCAACCGCCTCCTCAGCCCTTGACCCTCTCGGACGCGGGCCTGGCGAACCAGACGGTCTACCTCACC CTGCCACTGCGATCGGACGGCATTGCCCAAGTGCGCTGGCCAGACACCCATGGCAATACCCGTTATGTCCTGCATACGGAGGAACTACTCGACACGCACA GTCATCAAGGCAGCCACGCGCCAGTGGCCCTGGCCGTACCCAGCCTGCAACTGGCACTGCAACGCGATGACCGAAGCGCCTTTACCAGCCTGGCCTTGGG GCGCATCCTCGAGCGCAGGCCCGACGGCCATCTTCTGCTGGACACTGCGTTCTACATTACCGGGCTGTACCTCAGCGCCATCCGTCCGCTGGTGCAGTTC ATCGAAGAAGTGTTCTCCCTCATGCAGGCGCGGGCCAAGAACATTGCACAACGCATCGGCTCCCCAAGCCAATCCGGTGTCGCTGACTTCAGCGACTTCA ATCTGCTTCAGGCCCTCAATCGTTGGCAGCATCAGTTTCGGCACATGGCACAAGATCCGGACGTCAGTCCACTGGACGCCTACCTGGCTTGCGGCCAGGC CTGTGGGGAACTGGCCACCTGCATCGACCATTCAAGGCTTGCCCCGGAGTTTCCTGCCTATCAGCACGACAACCTCAAGAGCACCTTTCAGATGCTCGAG GATACCTTGCGCCGCCTGTTGGGTACCGTGCTGCAGCCGCGCGCGGTTTCCGTGCCGTTGGTCAAACAGGGGCACGGCATCCTCACTGCGCAGGTTACGG ATAGCAGCTTGATGGACAGCGCCGACTTCATCCTCGCCGTCCGCGCCCGGATGCCACTGGACCAGATGCGGCAACTGTTCCTGCAGCAAACCAAGGTTGC GTCCCAGCAATCGCTACTGGAGCTCATTCGCCTGCAACTTCCGGGCATACCTCTGAGCCCGCTGCCAGTGGCGCCGCGGCACCTGCCGTTCCATGCCGGC TTCACCTACTACCAACTCGACCGTACCTCCACCGCCTGGCAGAAGCTGATACCCCGGGGCACCAACAGCTTCGGTTTGCACATCAGCGGTGAATTCCCGG AGCTGCAGTTGCAGTTCTGGGCCATCCGGAGCCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CATGAGCACCACCATCTGTAGCGAAAACGGACTGCGCGACCGCCGCTTCAATGCTGTGGCTGAGGCATCTGCGGCCAACGAGCAGAACGGCCTTCCCTCC GACCCGCCGAGGGATGACTTCTTGCGAACCGCACCGACTGCAGGCATCCCCGACAAGACCAGCATCGTCTACGACACAGTATTGCGGACTGACGATGACG CCGACCTTCAGTTCCAGCTTCGTGGCCATAGTCTCAATCCCTTGATCGACGCCGCTCAACCTCTCTTTGGCCTCGTCATACGCCTGCGCCGCCTGGAGCG CTGCAACGACATACCCAAGCTCTATGCAAGCGTGCGCGACCAGATAACAGCACTGTCTGAAGAGATTCGTCAGCACGGCTACGACGCCGCTACGCAACTG GCCTACCGATATGCCCTGTGTGCGTTCATCGACGAGGCCGTCATGGCCACCGAGTGGGGCAGACAATCCGTGTGGCGCGAACGCTCGCTACTGAGCTACC
|
|
| Amino Acid Sequence |
>hypothetical protein
MTTRNPVAWSEGLFVKPQHFQQTTRYLEHYINARHASRYGYGFSELELNQEFLAFGKIAIVRARGIMPDGSLFNIPNDQPPPQPLTLSDAGLANQTVYLT LPLRSDGIAQVRWPDTHGNTRYVLHTEELLDTHSHQGSHAPVALAVPSLQLALQRDDRSAFTSLALGRILERRPDGHLLLDTAFYITGLYLSAIRPLVQF IEEVFSLMQARAKNIAQRIGSPSQSGVADFSDFNLLQALNRWQHQFRHMAQDPDVSPLDAYLACGQACGELATCIDHSRLAPEFPAYQHDNLKSTFQMLE DTLRRLLGTVLQPRAVSVPLVKQGHGILTAQVTDSSLMDSADFILAVRARMPLDQMRQLFLQQTKVASQQSLLELIRLQLPGIPLSPLPVAPRHLPFHAG FTYYQLDRTSTAWQKLIPRGTNSFGLHISGEFPELQLQFWAIRSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|