Pseudomonas mosselii DSM 17497, Q380_RS0123010
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 433 | 587 | 9.7E-47 |
| Coils | Coil | Coil | - | - | 596 | 616 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 294 | 426 | 9.0E-19 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 307 | 373 | 8.9E-9 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 606 | 860 | 1.8E-94 |
| Coils | Coil | Coil | - | - | 288 | 308 | - |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 608 | 840 | 2.6E-70 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 428 | 591 | 4.3E-41 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 602 | 845 | 2.4E-110 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 421 | 592 | 1.2E-60 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 308 | 418 | 3.9E-7 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 62 | 214 | 2.6E-13 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 316 | 418 | 7.486E-7 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 433 | 590 | 1.64444E-50 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 437 | 594 | 5.41E-48 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 427 | 605 | 1.2E-57 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 295 | 419 | 2.09E-20 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 607 | 853 | 1.31E-86 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 303 | 426 | 5.8E-12 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 608 | 842 | 1.44862E-106 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 427 | 593 | 3.2E-40 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 288 | 857 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.